Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01775 ATGTTAGGTTCACAGTACCACTTGCAGGGATCGAAAGACTGGGATGAAGATGGCATAAAAATAATCCAACTTCTCAACGAGTGTGCCAGTTTTACTGAATCAGGAAACTTCATTGATGCAGATACTGCACTCTACAATCTTTCTCACCTTGCTTCCCCAGATGGCGATTCAATGCAACGAGTTGCCACTTATTTCACTGAGGCACTAGCACATTGCCAATTGGCCAAAAATCTGCGTGGTGTACCTAAAGTTCTCCGCTTGGTGAGAGCATTATCAACTCCTGAACAGCAACTTCTGAATCAGCTCTTCTTTGATTTCTACCCCTTCTTAAAGATCGCTCACACGATCACAAATCACACCATTATAGAAGCCATGCGAGGGGAAACAGCGATCAACGTGCTTGATCTCAGTCCATCCAACGCAGATCAGTGGAGTAATCTCATGCAGGGTTTGAGAGAGCATTTAACAAACACACCGTATCTGAAGATTACTGTCACAGCCATACACGAGAAGAAGGAAGTGTTAGAACAAATGGAGTTGCGTCTGAAAGTTGAAGCTGAAAGGTTGAACTTCCATTTCAAATTCAACGCTGTTGTGAGCAGTTTGGAGAGCCTTGACCCTGAGACATTGCCCATCAAGAAAGGTGAGCCTCTTGCGATTTGCTGCGTGCTTCGGCTTCATTCTCTTCTGGCTGCAAATCATGATGAGATGGTGAAAACGAAGGTTCAGAGGGCTTTTTCTGAGATGCTTATAAATCAAAGTCCTGACTCTGCACTCTCACCTTTTTCTCCATGTCCATCACAGAAGATGGAGAGTTTTCTGAATGGTCTGTGGCGGCTCCGACCCAAAGTGATGGTGATCACTGAGCAGGAATCAAACGTTAATGGAGCTAGTTTGAGAGAAAGGGTGTTCAAAGCTTTGAGCTTTTACTGCACACTGTTTGATTGCTTGGAAGCCTCAGCTTCAAGAACATTGATAGGGAGAAGCCTATTGGAGAAGATGCTTCTTGGTGAAGAGATCAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTAGAAACATGGATTCCAAGGCTTGAATTGGCTGGATTTGGAATGGCTTCTGTTAGTTCCAATGGAATTTGGCTTGCAGAAAAGTTGTTGCAAAGCTATGTGCCTGGTTACCACATGCATCAGAAGAACCAGTTCTTGTTTATTTGTTGGGAGAAAATTCCTCTGTTTTCAATTTCTGCATGGAAGTTTTAG 1263 0.4363 MLGSQYHLQGSKDWDEDGIKIIQLLNECASFTESGNFIDADTALYNLSHLASPDGDSMQRVATYFTEALAHCQLAKNLRGVPKVLRLVRALSTPEQQLLNQLFFDFYPFLKIAHTITNHTIIEAMRGETAINVLDLSPSNADQWSNLMQGLREHLTNTPYLKITVTAIHEKKEVLEQMELRLKVEAERLNFHFKFNAVVSSLESLDPETLPIKKGEPLAICCVLRLHSLLAANHDEMVKTKVQRAFSEMLINQSPDSALSPFSPCPSQKMESFLNGLWRLRPKVMVITEQESNVNGASLRERVFKALSFYCTLFDCLEASASRTLIGRSLLEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGMASVSSNGIWLAEKLLQSYVPGYHMHQKNQFLFICWEKIPLFSISAWKF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01775 420 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 414 IPR005202 -
Vian5g01775 420 ProSiteProfiles GRAS family profile. 12 419 IPR005202 -
Vian5g01775 420 Pfam GRAS domain family 22 419 IPR005202 -
Vian5g01775 420 Coils Coil 168 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01775 Vian-Chr5 40011237 40012499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01775 4 419 GRAS Transcription Factor Family AT1G50420 42.152 5.60e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian5g01775 GRAS 4.7e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01775 - - vra:106778126 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01775 5 40011237 40012499 Vian5g01775 5 40011237 40012499 ECH