LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g01773	ATGGCGCTTAAAACCCTATCCACTTTCCTCTCACCTCTTTCTCTTCCCAAATCCAAATTCCCGCAACATTTACTCACCACCAAGCCTGGCCTCGTTCTATGCGAATTCTCGCGCTCTCAGAAATCGCGTTTGCCCGCCGACGAGTCGGAAGGTACCGGCGCCGCCGCTCCGTCGCCCGGAGAGAAGTTTCTCGAACGCCAACAGTCGTACGAAGCTGCCAAGATCATCCTCAAAGAAAATAAGAAGAGGAAAAAGAAGAAAGATAACGCTGTAAAAGCTTCTCGAAACGTCGCTTCCTGCTACGGCTGTGGCGCTCCATTGCACACTTCCGATGCCGTCGCCCCTGGATACGTTGATCCTGAAACCTATGAATTGAAGAAGAAACACCACCAGCTTAGAACCGTTCTGTGTAGACGGTGCCAGCTTTTGTCGCACGGCGAGATGATAACTGCCGTTGGAGGACACGGAGGATACCCTGGCGGTAAATTATTCGTTACCGCTGAAGAGCTTCGGGAGAAGTTGGCTCACTTGCGTCACGAGAAAGCTCTTATTGTCAAACTGGTTGATATTGTTGACTTCCATGGCAGTTTTTTGTCTCGTGTGCGAGATCTTGCTGGTTCTAACCCAATTATACTGGTGGTGACTAAGGTTGATCTCCTTCCAAGAGATACTGATCTTAATTGTGTAGGGGATTGGGTTGTAGAGGCTACCATGAGAAAGAAGCTGAATGTTCTCAGTGTTCATCTCACCAGTTCCAAATCATTGGTTGGAGTAACTGGAGTGATATCAGAAATCCAGAAAGAGAAGAAGGCTGCTATAGCTTTTAGACATTCTTGGAATAGGAAGCGGAAGAGATGTTTACATTCTGGTAAGTCTACGAATTGGAAGTTTGATATTCTTAAGCAGGGTTCAGCAAATGTTGGAAAATCCGCCTTCATCAATGCTTTATTAAAAACAATGGCTATAAATGATCCCGTGGCTGCATCTGCACAAAGATACAAACCAATACAATCTGCAGTTCCTGGAACTACCCTAGGGCCAATTCAAATTAATGCTTTTCTAGGAGGAGGGAAGTTGTATGACACTCCCGGAGTTCATCTCCACCATAGGCAAACTGCAGTTGTTCAATCTAAAGATCTACCTTCCCTTGCTCCTCGGAGCCGATTGAGGGGCATTTCTTTCCCGAGGTCTTCGGTATCTGCGGACAATGTAGAGCAAGTAGCTTCTATAGAGAATGACTTGAATGCATTTTCAGTTTTCTGGGGAGGTCTTGTTAGAATTGATGTCTTGAAGGTTCTCCCAGAAACTTGTTTGACATTTTATGGGCCCAAGGGACTACAAATACATATGGTACCCACAGAGAAAGCAGACGAGTTTTATCAGAAAGAACTTGGTGTCCTCCTGACTCCACCAAGTGGAGGAGAAAATATTGAGAGCTGGAAAGGACTTGAATCAGAACGTAAATTGCAAATAAAATTCGAAGATGTGGAAAGACCAGCTTGTGATATAGCTATATCAGGTCTAGGGTGGTTTACTGTCGAGCCAGTTGGTAGGTCACGCAAAATCTCTCAATCAAAACCTGTTGAGACTACTGAGGAATTGATTTTGGTCGTGCGAGTCCCCAAACCTGTTGAGATTTTTGTGAGGCCACCGATACCGGTAGGCAAGGCTGGAGCAGAGTGGTACCAGTATGTAGAATTAACAGAGAAAGAAGAGGAAATGAGACCCAAATGTGTCTCTGCCACCTTCAATCACAAATGGCTCCATCTTCTGCCATTGTCACTTCCCGTTTTCATGAATCCATCACTCGCCATGCACTTCGCTCCTATCTCTCTGAGTTCATCTCCACCTTCTTCTACGTCTTTCTCGTCGTTGGCTCTGGAATGTCCTCACTTTGTCTGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTCTGGTTGTGGTTTCCATTGCAAGTGCTTTTGCTTTGTCTTGTGTTCTGTATAATGCATGGGAGATCTCAGGTGGACACGTCAACCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCACTCTTTTACTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGAGGCATTGTTGTTGGCATGCATGTTCCAACCTACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGCTAGAGGGTCTTCTGACATTTGTTTTGGTGTACACAGTGTATGCAGCCAGGGATCCTAGGCGTGTTTCACTGGGTTCCAATGGCATACTTGTAGTTGGGTTTGTGGCTGGTGCAGGTGTCTTAGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCTGCAACCATTGCAGGCTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCCACCATAGCTGGGCTTCTTTATGATAATGTGCTGTTCCGTTCTCTGCCTCCAGCAGCAGGGCTTTCAGAAGGAATTGGGGTCTGA	2529	0.4666	MALKTLSTFLSPLSLPKSKFPQHLLTTKPGLVLCEFSRSQKSRLPADESEGTGAAAPSPGEKFLERQQSYEAAKIILKENKKRKKKKDNAVKASRNVASCYGCGAPLHTSDAVAPGYVDPETYELKKKHHQLRTVLCRRCQLLSHGEMITAVGGHGGYPGGKLFVTAEELREKLAHLRHEKALIVKLVDIVDFHGSFLSRVRDLAGSNPIILVVTKVDLLPRDTDLNCVGDWVVEATMRKKLNVLSVHLTSSKSLVGVTGVISEIQKEKKAAIAFRHSWNRKRKRCLHSGKSTNWKFDILKQGSANVGKSAFINALLKTMAINDPVAASAQRYKPIQSAVPGTTLGPIQINAFLGGGKLYDTPGVHLHHRQTAVVQSKDLPSLAPRSRLRGISFPRSSVSADNVEQVASIENDLNAFSVFWGGLVRIDVLKVLPETCLTFYGPKGLQIHMVPTEKADEFYQKELGVLLTPPSGGENIESWKGLESERKLQIKFEDVERPACDIAISGLGWFTVEPVGRSRKISQSKPVETTEELILVVRVPKPVEIFVRPPIPVGKAGAEWYQYVELTEKEEEMRPKCVSATFNHKWLHLLPLSLPVFMNPSLAMHFAPISLSSSPPSSTSFSSLALECPHFVWKLMPDASLNPTSLVVVSIASAFALSCVLYNAWEISGGHVNPAVTFAMAVGGHVSVPTALFYWVAQLIASVMACLVLRGIVVGMHVPTYTIAEEMTGFGASVLEGLLTFVLVYTVYAARDPRRVSLGSNGILVVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSLPPAAGLSEGIGV	842

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g01773	842	PANTHER	NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL	302	578	IPR044229	GO:0003924
	Vian5g01773	842	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	170	368	IPR027417	-
	Vian5g01773	842	Pfam	50S ribosome-binding GTPase	303	370	IPR006073	GO:0005525
	Vian5g01773	842	Pfam	Major intrinsic protein	645	822	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vian5g01773	842	Gene3D	Glycerol uptake facilitator protein.	621	831	IPR023271	-
	Vian5g01773	842	PRINTS	Major intrinsic protein family signature	805	825	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vian5g01773	842	PRINTS	Major intrinsic protein family signature	691	710	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vian5g01773	842	PRINTS	Major intrinsic protein family signature	654	678	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vian5g01773	842	PRINTS	Major intrinsic protein family signature	768	790	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vian5g01773	842	PRINTS	Major intrinsic protein family signature	736	754	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vian5g01773	842	FunFam	Probable aquaporin TIP5-1	622	834	-	-
	Vian5g01773	842	Gene3D	-	168	369	IPR027417	-
	Vian5g01773	842	CDD	YqeH	137	365	-	-
	Vian5g01773	842	ProSitePatterns	MIP family signature.	672	680	IPR022357	-
	Vian5g01773	842	SUPERFAMILY	Aquaporin-like	641	831	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g01773	Vian-Chr5	39993690	40002929	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g01773	635	826	Major Intrinsic Protein MIP	AT3G47440	66.146	4.57e-79	254

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g01773	K13427		-	gmx:100781340	899.427

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian5g01773	5	39993690	40002929	Vian5g01773	5	39993690	40002929	ECH