Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01746 ATGGCTGCTGCTGACGACACAAACCCTCCTAAGGATTATTACAAAGTGCTGGAGGTTGATTATGATGCAACTGATGAAAATATCAAATTAAATTACCGAAGACTCGCATTGAAATGGCATCCTGACAAGCACGGAGGTGACAGTGCTGTTACTACAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTTTTGATTATGATTTAACGGGGATATGCGAAATTGAAAAATATAGTTTACAGGAATATCTTGCCAGATTTAAGGGCATGATTCTTACCTGCAATGGACTTGGTATCAGTCAAACAGACAGATGGTCACCACAATTGATTGAAAATTTTGAATCCCTTGATAAATAA 375 0.3707 MAAADDTNPPKDYYKVLEVDYDATDENIKLNYRRLALKWHPDKHGGDSAVTTKFQEINEAYNVLSDPAKRFDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGISQTDRWSPQLIENFESLDK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01746 124 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Vian5g01746 124 CDD DnaJ 12 66 IPR001623 -
Vian5g01746 124 Gene3D DnaJ domain 2 90 IPR036869 -
Vian5g01746 124 SUPERFAMILY Chaperone J-domain 10 97 IPR036869 -
Vian5g01746 124 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vian5g01746 124 PRINTS DnaJ domain signature 49 69 IPR001623 -
Vian5g01746 124 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vian5g01746 124 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 108 - -
Vian5g01746 124 SMART dnaj_3 11 69 IPR001623 -
Vian5g01746 124 FunFam Chaperone protein DNAj, putative 4 91 - -
Vian5g01746 124 Pfam DnaJ domain 12 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01746 Vian-Chr5 39763633 39766787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01746 13 74 C2H2 Transcription Factor Family AT1G74250 43.284 6.39e-10 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01746 5 39763633 39766787 Vian5g01746 5 39763633 39766787 ECH