Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01735 ATGATGGGGAGAGCACCATGCAGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAATATATTGGTGGATTACATTCAGAAACATGGGCATGGAAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGGAAAAGTTGTAGGCTAAGGTGGACAAACTATTTGAGACCTGATATCAAAAGAGGAAAGTTCTCTGAGGAAGAACAGCAACTCATCATCAATTTACATGCAGTTCTTGGCAATAAGTGGTCAGCTATAGCAGGTCATCTGCCAGGAAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTGGATCCAGTGACTCATCGTCCAAGATCAGATCAGCTTAATCTTCTATCCAGTCTTCAACAGTTGCTGACTGCTACAAACATTTTCACAAACACTTTGGACATTAATGCTCTAAGGCTGCAATCAGATGCTACAGAACTAGCCAAACTCCAATTGCTGCATAACATGCTTCAAGTCCTTGTGGCTAGTCCTGCCTCAAACTTGGACCTGCTCAATCCTTTTGGATCATCACTGCCAGATGAAATTTTGGGATTGGATCAGTCCAAGCTCCAAAACCTTTACAATAGTTCAACTGGTTTTCTTTCTCAGAATCAGTCAAACTTTTTTCAAAGCTTTGAAGCTCCTCCTCAGCAGCAAGCTCTACCAACTGGGTATAACCACATGAATGGAGGAAGCAACAGGAGTTGCATGAAATCTGAAAAGGTTGATGAACAACTCGATGTCCCTTATTCATTTTCAACAGCATTAGATTCTCTTCCAAATCTGGTTTCAGCCACACCCGAATGTTCAAGTGGCAAACAAATGGAAAACATGGTAAACCCAAATGAATTTTCTGACCCTTCTTCCACTTCAACCACCTTTGAAATGTTGGGAGATTTCATGTATGAGGAAGTAACTGATGCTTATTGGAAAGATCTCATAGAGTAA 1011 0.4115 MMGRAPCSDESGLKKGPWTPEEDNILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEQQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDQLNLLSSLQQLLTATNIFTNTLDINALRLQSDATELAKLQLLHNMLQVLVASPASNLDLLNPFGSSLPDEILGLDQSKLQNLYNSSTGFLSQNQSNFFQSFEAPPQQQALPTGYNHMNGGSNRSCMKSEKVDEQLDVPYSFSTALDSLPNLVSATPECSSGKQMENMVNPNEFSDPSSTSTTFEMLGDFMYEEVTDAYWKDLIE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01735 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vian5g01735 336 FunFam MYB-related transcription factor 14 67 - -
Vian5g01735 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian5g01735 336 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vian5g01735 336 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vian5g01735 336 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vian5g01735 336 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vian5g01735 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 274 - -
Vian5g01735 336 Gene3D - 70 117 - -
Vian5g01735 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian5g01735 336 Gene3D - 12 68 - -
Vian5g01735 336 FunFam Transcription factor MYB39 70 131 - -
Vian5g01735 336 SMART sant 67 115 IPR001005 -
Vian5g01735 336 SMART sant 14 64 IPR001005 -
Vian5g01735 336 CDD SANT 70 113 IPR001005 -
Vian5g01735 336 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01735 Vian-Chr5 39684332 39685488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01735 2 336 MYB Transcription Factor Family AT5G16770 50.142 2.09e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g01735 Myb_DNA-binding 7.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01735 K09422 - gmx:547488 519.62