Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01726 ATGTTAGTTACTTTGGACGAAACTACCCACATTTTCCGATCAAAGTTACCAGACATACCACTCCCTAACAACCTCCTCCTCCACGAATACTGCTTCCTTAAACTTCCCGAAGTCGCCCACCACACATGCCTCATCTCCGCCGCCAGAACCTACACCTACGCCGAAACTCACCGCGCCTCGCGGAAGGTTGCCGCCGGCATGTCGAAGCTGGGCATCCAGAAGGGCGACGCAGTCATGATTCTCCTCCCCAACTCCCCGGAGTTCGTGTTCACCTTCATGGCGGTCTCCATGCTCGGCGCCGTCGCCACAACCGCCAACCCCTCCTACACCGCCGCCGAACTCTCCAAGCAACTCGCCATCTCCAACGCCAAGCTCGTCGTCACCCTCTCCGCCCACGTCCACAAGCTCAATCAGCAAGCGCAGCACCACTTCTTCAAGGTGGTCACCGTCGACGACCCACCGGAGAATTTCTCGGCTTTCCCGGAGGGCGAAGAGAGCGAGGTTCCGGAGGTTGAGATATCAGTGGAGGACACGGTGGCGCTGCCGTTTTCGTCGGGGACGACGGGGCTAGCGAAGGGGGTGATTCTGACGCACAAGAGTTTGGTAACCAGCGTGGCGCAACAGATGGAGGGAGAGAACCCGCACATGTATCTGAAAGAAGAGGACGTTGTGCTGTGCGTGCTTCCTCTCTTTCACATATTCGCCATGCACATCGTGATGATGTGCGGGATGAGAGCGGGGAGTGCCATTTTGTTGATCGAGAAGTTTGAGATGAGGGCGCTGCTGCAGGCGATTGAGCGGCACAGAGTGACGGTGGCGATACTGGTGCCGCCCCTGGTGGTGGCACTTACGAAGAACAGCGCGGTGGAGGAGTACGATTTGAGTTCGATACGAATGGTGATGTCGGGGGCTGCGCCGCTGGGGCTACAGGCGGAGGAGGCTCTGCGGAACAGGTTGCCTCACGCCATTATAGGACAGGGCTATGGGATGACAGAGAGTGGACCAGTATTGACCATGTCTTTGGGTTTTGCAAAGTTTCCATTTCCAACCAAGTCTGGTTCGTGCGGAACTGTGGTGAGAAATGCTGAAATGAAGATCATCGACCCTCTAACTTCATTCTCTCTTCCCCGTAACCACCATGGCGAGATTTGCGTCCGTGGCTCTCAGATCATGAAAGGGTACCTGAATGACGAGAAGGCCACTGCAGAAACCATTGATGCAGATGGTTGGCTTCATACAGGTGACATTGGCTACGTTGATGATGATGATGAGGTTTTCCTCGTTGACAGGGCCAAAGAACTCATTAAATTCAAAACCTTCCAGGTGCCGCCGGCAGAACTTGAAGACCTTCTCAGGAGCCACCCTTCCATTGCAGATGCAGCTGTTGTCCCGCAAAAAGACGATGCTGCGGGCCAAGTTCCAGTCGCTTTCGTTGTTGGCTTTGATCTTACAGAAGATGCTGTAAAGGATTTTGTAGCTAAACAGGTAGTGTTTTACAAGAGGATACACAAAGTGTATTTGGTTGATGCAATTCCAAAGTCTCAGACGGGAAAGATATTAAGAAAAGAACTGAGAGCAAAGCTGGACTGCATTATTGAGCAGAACTAA 1608 0.5342 MLVTLDETTHIFRSKLPDIPLPNNLLLHEYCFLKLPEVAHHTCLISAARTYTYAETHRASRKVAAGMSKLGIQKGDAVMILLPNSPEFVFTFMAVSMLGAVATTANPSYTAAELSKQLAISNAKLVVTLSAHVHKLNQQAQHHFFKVVTVDDPPENFSAFPEGEESEVPEVEISVEDTVALPFSSGTTGLAKGVILTHKSLVTSVAQQMEGENPHMYLKEEDVVLCVLPLFHIFAMHIVMMCGMRAGSAILLIEKFEMRALLQAIERHRVTVAILVPPLVVALTKNSAVEEYDLSSIRMVMSGAAPLGLQAEEALRNRLPHAIIGQGYGMTESGPVLTMSLGFAKFPFPTKSGSCGTVVRNAEMKIIDPLTSFSLPRNHHGEICVRGSQIMKGYLNDEKATAETIDADGWLHTGDIGYVDDDDEVFLVDRAKELIKFKTFQVPPAELEDLLRSHPSIADAAVVPQKDDAAGQVPVAFVVGFDLTEDAVKDFVAKQVVFYKRIHKVYLVDAIPKSQTGKILRKELRAKLDCIIEQN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01726 535 Gene3D - 3 430 IPR042099 -
Vian5g01726 535 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 432 - -
Vian5g01726 535 CDD 4CL 21 524 - -
Vian5g01726 535 SUPERFAMILY Acetyl-CoA synthetase-like 6 528 - -
Vian5g01726 535 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 526 - -
Vian5g01726 535 Gene3D - 431 530 IPR045851 -
Vian5g01726 535 FunFam 4-coumarate--CoA ligase 2 433 530 - -
Vian5g01726 535 Pfam AMP-binding enzyme 40 437 IPR000873 -
Vian5g01726 535 Pfam AMP-binding enzyme C-terminal domain 446 518 IPR025110 -
Vian5g01726 535 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01726 Vian-Chr5 39639142 39641184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01726 11 463 Monolignol Biosynthesis Gene Families AT3G21240 60.606 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01726 K01904 - gmx:100790396 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01726 5 39639142 39641184 Vian5g01726 5 39639142 39641184 ECH