Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01722 ATGGCTTACATGTGTGCAGACAGTGGAAACCTTATGGCCATTGCGCAGCAAGTCATCAAGCAGAAGCAGCAGCAAGAACAGCAGCAGCAGAAACAGCACCAGCAGCACCACCAACATCATCATCATCACCATCACCACCATCACCAACACCATCTCAACCCTCTCTCCTTACATCCAATTCCATGGAACAACACTCCCACTCTCGGCTACCCTCTCCATCCCACCGACTTCCCCGACCCCTTCCAACCCGATCCCCCATTCCACTTCCCGGACACGCAATCCGCACCCGCACCGGCCCCCTTCCGCTTCTCCGATTTCGACTCCGACGACTGGATGGACTCTCTCATCGCCGCCGCCGACACCCCCTCCTGGCACACCAATGCCGATTTCCCCTTCCCCTCCGATCTCAACCGCCTCATCTTCCCCTCCTCCGACACTACCGCCGCCGCTACATCGCTCCCGCTCCAACCAACACCTCCCCCGCCGCCGCAGGAACCAGTCAACGCCGGCCTCTCCTCCGAACCCGAGTCCGCTCACCCGCTACTCAAAGCCCTAACAGAGTGCGCCTCCCTCGTGGAAAGCGAACCGGATCAGGCCGCGGAATCCCTCGCCCGGCTGAGAAAATCAGTATCCCAGCACGGAAATCCCACTCAGCGAGTGGGCTTTTACTTCTGCGAAGCCCTCTCCCGTAAAATATGGGCCGAGCAGGACAAGGGAGAGCCCAAAAGTGCGAAGACAACCACCTCAGAGGAGTTGACGCTGTCTTACAAAGCCCTCAACGATGCCTGCCCGTACTCCAAGTTCGCACACTTAACCGCCAACCAAGCCATCTTGGAAGCCACCGAAGACGCCTCCAACATACACATCCTGGACTTCGGCATCGTCCAAGGGATTCAGTGGGCCGCGCTCTTGCAGGCTTTCGCCACTCGCTCTTCCGGAAAGCCCAATAAGATCAAAATCTCTGGGATTCCCGCCATCGCTCTTGGGGCCTCGCCCGGCCCATCTCTCTCCGCCACCGGCAACCGCCTCTCCGAGTTCGCGAAGCTCCTCGACCTGAACTTCGAGTTCACGCCTATTCTCACTCCCATTCACGACCTCGACCGCAAGAGCTTTTGCATTGACCCCGACGAGGCCCTGGCGGTGAACTTCATGCTCCAGTTGTACAACCTACTTGACGAGCCCCCGACCGCCGTTGACACCGCCCTCCGGTTGGCGAAATCTCTCAACCCCAAAATCGTTACCCTCGGCGAGTACGAGGCAAGCTTGACACGTGTCGGCTTTGTGAACCGCTTCAAGACCGCGTTCAGGTACTTCTCCGCTGTTTTCGAGTCGCTGGACCCTAACTTGGCCGCGGACTCACCGGAGAGGTTTCAGGTGGAGAGTCTTCTCCTGGGGCGGCGAATCGACGCGGTGATTGGGCCTGGGCCGGTGAGGGAGAGCATGGAGGACAGGGAGCAGTGGAGGGCTCTGATGGAACGTGCTGGGTTTGAGTCTGTGAGTCTGAGTCATTATGCAGTTAGTCAGGCGAAGATACTTCTCTGGAATTACGGTTACAGCTCTCTGTTTTCGCTGCTTGAATCCACGCCGCCGGGCTTCTTAACTCTCGCTTGGAAAGATGTTCCTCTCTTGACTCTCTCCTCGTGGCGCTAA 1650 0.583 MAYMCADSGNLMAIAQQVIKQKQQQEQQQQKQHQQHHQHHHHHHHHHHQHHLNPLSLHPIPWNNTPTLGYPLHPTDFPDPFQPDPPFHFPDTQSAPAPAPFRFSDFDSDDWMDSLIAAADTPSWHTNADFPFPSDLNRLIFPSSDTTAAATSLPLQPTPPPPPQEPVNAGLSSEPESAHPLLKALTECASLVESEPDQAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWAEQDKGEPKSAKTTTSEELTLSYKALNDACPYSKFAHLTANQAILEATEDASNIHILDFGIVQGIQWAALLQAFATRSSGKPNKIKISGIPAIALGASPGPSLSATGNRLSEFAKLLDLNFEFTPILTPIHDLDRKSFCIDPDEALAVNFMLQLYNLLDEPPTAVDTALRLAKSLNPKIVTLGEYEASLTRVGFVNRFKTAFRYFSAVFESLDPNLAADSPERFQVESLLLGRRIDAVIGPGPVRESMEDREQWRALMERAGFESVSLSHYAVSQAKILLWNYGYSSLFSLLESTPPGFLTLAWKDVPLLTLSSWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01722 549 MobiDBLite consensus disorder prediction 154 168 - -
Vian5g01722 549 Coils Coil 12 35 - -
Vian5g01722 549 ProSiteProfiles GRAS family profile. 172 549 IPR005202 -
Vian5g01722 549 Pfam GRAS domain family 182 549 IPR005202 -
Vian5g01722 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 152 543 IPR005202 -
Vian5g01722 549 MobiDBLite consensus disorder prediction 34 53 - -
Vian5g01722 549 MobiDBLite consensus disorder prediction 149 175 - -
Vian5g01722 549 MobiDBLite consensus disorder prediction 18 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01722 Vian-Chr5 39616387 39618036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01722 1 549 GRAS Transcription Factor Family AT5G66770 55.980 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian5g01722 GRAS 7.8e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01722 - - vum:124844288 976.081