Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01703 ATGGCAGACAGTGTAGTTTCCTTTGTTTTAGATCACTTAGCCCAGCTTGCCGCACGCGAAGCTAACTTGCTCTATGGCGTGGAAGACAGAGTCCAGTCTCTACAGTACGAACTTCAGATGATCAAAGACCTCCTTAATACCACAAAGAGAAAGAAGGGAATGGAACATACTGTTGTGAACCAAATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGACACTTTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCCTTCTGGGGAGGATGCTCCGTGGCTTTGGCCAAGCAAGGTTGCTCCGCCACGTAGCCGACAAAATAGACAAGCTCAAAACCACTCTCAACGAGATACGCGACAACAAGGATAAATATGATGCTTTCAGAGAAGCCACTAATCAATCCGCAGCAGAAGAAGAGGAGGAGAAGGAAAGGTTGCAATCACTGCACAAGCTAAGAAGAGACGTGGAGGAAGAACACGTGGTTGGCTTTGTCAAGGACTCCAAGGATGTCGTCAAGCGACTCCAGGAAGGTGGTTCGAATCGTAAAGTTGTCTCTATCGTTGGCATGGGGGGGTTGGGGAAGACCACCCTTGCCCGAAAGGTCTATAATAGCAGTCAGGTGAAGCACCACTTTGATTGTTGTGCGTGGGTTTATGTCTCAAACGAGTGCAGAGTTAAGGAGCTTTTGCTTGGTCTTCTTAAGCAATTGTTGCCAAATTTTCAACAACAACGTAGCGGCAACAAGAAGGGTAAGAAAAGCGTCGAAGACGTTAACAACCTGAGTGAGGAGCAGCTGAAGAAACAGGTGTTGAAATGCTTGGAGAAAAAAAGGTATCTTGTGGTGATAGATGACTTGTGGAAAAGGTGGGATTGGGATGAGGTGCAACATGCTTTTCCAGACAACAACAGAGGCAGCAGAATATTGATAACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGTTCCTCACAATCTTCAGTTCTTGAGTAAAGAAGAAAGTTGGGAGTTGTTTTGCAGGAAAGTGTTTAAGGGTGAAAACTGCCCTTCTGATTTGGAGACCTTAGGAAAGCAGATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCGTCATTGTTTTAGCAGGACTGCTAGCCAAGAAAGAAAAATCACATAGAGAATGGTCTAAAGTGGTAGGTCATGTTAATTGGTATCTGACTCGAGATGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGCTACGACAACTTGCCAAGAGCATTAAAACCATGTTTTCTCTATCTTGGGCTATTTCCTGAAGATTTTGAAATACCTGTTATGTCATTATTGCGACAATGGGTTGCGGAGGGTTTTATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAGGTACCAAGAGTGGACTGGAAAGGAGATTTGGAGAAGTTTCAAGTTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGAGAAAGTGTTTGAAGTTTGCACAGACAATAACATTCTAATCCCTACCAAACCTCGCAGACTGTCCATTCACAGTAACATGGGTCACTACATTTCTTCAAGCAACAATGACCATTCATGTATTCGTTCCTTGTTTCTCTTTGGGCCACAGTATGATGCTGGTGGGAGAGAGTGGAAATGGCTTTTGGACGAGTGCAAATTGGTTCGAGTGTTAGAGTTTGGATCTAACTGTTGCCATAAGATCCCTTCCAATTTAGAGAACTTCATCCACTTAAGGAGGATCTATCGAATTGCGAGGAAGATGTTCAGAATTAGATGA 1851 0.4425 MADSVVSFVLDHLAQLAAREANLLYGVEDRVQSLQYELQMIKDLLNTTKRKKGMEHTVVNQIRDVAHLAEDVIDTFVAKVSIYKRRTLLGRMLRGFGQARLLRHVADKIDKLKTTLNEIRDNKDKYDAFREATNQSAAEEEEEKERLQSLHKLRRDVEEEHVVGFVKDSKDVVKRLQEGGSNRKVVSIVGMGGLGKTTLARKVYNSSQVKHHFDCCAWVYVSNECRVKELLLGLLKQLLPNFQQQRSGNKKGKKSVEDVNNLSEEQLKKQVLKCLEKKRYLVVIDDLWKRWDWDEVQHAFPDNNRGSRILITSRLKEVALHAGDDVPHNLQFLSKEESWELFCRKVFKGENCPSDLETLGKQMVQSCRGLPLSVIVLAGLLAKKEKSHREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPRALKPCFLYLGLFPEDFEIPVMSLLRQWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQVPRVDWKGDLEKFQVHDLLRDLCISESKEEKVFEVCTDNNILIPTKPRRLSIHSNMGHYISSSNNDHSCIRSLFLFGPQYDAGGREWKWLLDECKLVRVLEFGSNCCHKIPSNLENFIHLRRIYRIARKMFRIR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01703 616 CDD RX-CC_like 2 121 IPR038005 -
Vian5g01703 616 FunFam Probable disease resistance protein At1g61300 144 327 - -
Vian5g01703 616 FunFam Probable disease resistance protein At1g63360 418 507 - -
Vian5g01703 616 FunFam Probable disease resistance protein At5g66910 332 419 - -
Vian5g01703 616 PRINTS Disease resistance protein signature 185 200 - -
Vian5g01703 616 PRINTS Disease resistance protein signature 367 381 - -
Vian5g01703 616 PRINTS Disease resistance protein signature 274 288 - -
Vian5g01703 616 Gene3D - 332 417 IPR042197 -
Vian5g01703 616 Pfam NB-ARC domain 170 420 IPR002182 GO:0043531
Vian5g01703 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 432 IPR027417 -
Vian5g01703 616 Gene3D - 5 96 - -
Vian5g01703 616 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vian5g01703 616 Coils Coil 102 122 - -
Vian5g01703 616 Gene3D - 418 509 IPR036388 -
Vian5g01703 616 Coils Coil 130 160 - -
Vian5g01703 616 Gene3D - 144 326 IPR027417 -
Vian5g01703 616 PANTHER DISEASE RESISTANCE PROTEIN RP 33 594 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01703 Vian-Chr5 39452027 39454038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01703 163 504 WRKY Transcription Factor Family AT5G45050 22.254 8.64e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01703 - - var:108340521 1108.98