Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01680 ATGGAGTTTGTGGGGAAGACAGTTAAGAAAGAGGTGAAGGGGTTTGGGATTATTTCGGGAACAGTGAAATCGTACGACTCTGCGTCTGGTTTTTTGGAGATCGTTTACGAAGATGGTGATTCTGAGGAATTGGAGTCCTCTGACGTGGCTTCTCTCTTGCAATTTCAACCGGAGAGTGTCAAAGCTAAGCCTCGAGTTGGTCGGAAACCTAAGAAGCGTTGCCGGGTCGAGAGGAAGCGCGATGTTGGAGCAGGTTCAGGTAATGTTAGAGAGAATTTGGTGGCGGAGGGTAGTGGTTTTAGGGGGGTTTTGGATGGGGATGTTTCTTCTGGTAGTGGTGGGGGTTTGGATTTATATAGTGGTGTGTTAGAGAGAAATTTGGATGGTATAGTTGGGAATGGAGGGAATCTTGAGGGCAATGCTAATGGGAGTAAGGAGGAAAATGGGGTTAGAGAAACTCTGATAGAGGAAACTGGCTTAGAAGATAGTTTGAACAAGAGTTTATCCGGAAATGTTAGTTGTGTTAAAGATGGACTTGATTTGAATGCTAATCTGGATGAGGATTTAAATCTAGATGTGAGTAATGAGGATCGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTGAGTAATGAGGATGACGTCAGCAGGGGAGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAATGTGGAGGTAGTATGTGAAGAAGGTAAGGAAACTCGGTGTGATGGTGATGGAAATGGACATTCTTTGGTGGATAATGTTTTGTTTGGTAAGATGGGGCTGTCCCAAAAGGAAGAGATAAATGTTAATAATAGTTTTGTGGAAGGTGACGGCATTAATGGTAATTTCAATCACGCCTTTGATGCGGTTAAATTGGAGGTAATTCATGTTTCTTCTGATCATCCATCTAAAGAAGGTTCTTTGTGTTTGGTTGAGGAAAATGGAGGAGACAGTCGCAAAGAAGACGCAGGGACTATTAATTCTCATCAGATTTCAAGTGCAATTTCTGTTAGGGATTCAGATTTTGGGGAGCGAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATGAATACCAAGATGATCCAGGAAGTCCTTGCAAACAAGAAAAATTCCTAGATGTTTCAGGAAGTCCATGCAAACAAAAAAATAGTAGAAGGAAAAGAAGAAAATTATCAGATAATCCAGGAGCCATGCCAGAGACAGTTTTAAGGAGGAGCTCTCGTCGGGCATCAGCCAGAAAAGGGGTTTCAAGCACCTTAGAAGTGGAAGTGGCTGATGATGCTTTGGTAACCTTGGGAACTGATGTCTTAACAGAAGAAAAACCTCTAATCCTTGTTTCTCAGAAATCTGAGCAATATAACAATGATCTTAGATACAGGCAATGCAACAATCTTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGATGGTGTTCCTGTTCTTGAACTGTTTTCTATTTATGCCTGTTTAAGATCATTCAGTACTTTGTTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTGGCTGCACTGAAGTCTGAAATTCCAAGTTTATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGGAAGCAGTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGTCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCAGAGTACCTTCTGATTCATGACTCAGGATTTAAAACTGGTTTTGATATTAAACATCTAATGTTCAGAACTGATTACTATAGACAACCTGTAATGGTGAAGGTCGAGATTCTCCAATACCTGTGTGATGATATGATTGAATCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTTACGGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACGCATCCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTGGATGACACAACTGACTGGAATAGTGACGAGTGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGACGGTTGCCCTGCTGCATTCCATTCACGATGTGTGGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTGGATGAAATCACGAAGGTCACTTCGAGGAGCAGACCTATTAGGGATGGATATGGATGGTAGTGTCTATTTCAACAGCTGCAGTTACCTGCTAGTGTCAAGCTCATCTGAAGCAAGGCCATTGTTCTATTACTACCACCGAAATGATATACATGTAGTAATTGAAGCTCTAAAATCTATGGGTCCTTTATATAGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAAAGCTAACTTGAATGTAGGGGATAGTGTCTTTAATCAAAATTCCGGCAAGAACATGCAGATGAAGGGAGAATATTCTACTATGTATACATCTTTGGCACCTTCTACATCAGAGATATGTTTGGACAATAATCAGGCCAATGATCAAGGAAAGTTGGATGAAAATTCAACTGTTGACTGTTGTATGCAACTTGGCCAAGAGTTTCCAAAAGTTGGGAACTGCCTAGATTCAACGATCACCATAGAAAGTCCTTGTGTTGCTTCAGATGGATCAGCTGATACCACACAGACGAGAACAGGCACCAACAATGTTCAGACGTGTGGGCTCAATGATTTCAATAGATGTAATGAATCCTTGAATCAGCCAGGAGTACCAGAAAGACACTATCCCGACTGTTCTTTGACATCTTCCAGCTTGGATGTGGGGCATAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCCCCAGACAGTAAGGATAATTCTGAAGGACCTTGTGGAACTGAGTATGTAAACTATTATAGCTTTGCCCGAACAGCTTCATTTGTTGCACAGGAGTTGATGTGTAAGTCGCCTGAGAAAATGAATAAGATTTTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAACCAAGGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCCCGAACTGGATGCAGCAGCTCAAAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGCTAATGAAGACAGGGATTGTTTGTTTAATTCTGTTGTGAAGCCTGTTTGGGAAGTGTCCAATAGCACTTCGGTTGGGCTTCAACCCAGGAATATCCAGAATGGGCATCTTAGAGATATCATATGCCTTATCTTCTCTCTTGAGGTTCGGTTACGTGGGCTTTTATTGGGTCCGTGGCTTAATCTGCATCAAATAAATCTTTGGCATAAAGATCTTTTGAAGACATCTGATTTTCTTCGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGGTCCGCTATTCATATTGTGGTTTCACGCACATCTTCCAGGCATGGTATTGCAAAGAAAAGGGCCAGGTATTCAGATAATGAAACCAGTTCATCTTCAAACAGTGCTAGTGGTTTGGGAATGTACTGGTGGAGAGGTGGCAGGCTGTCCCGAAAATTGTTTAATTTGAAGGTTTTGCCTCACTCCTTGGTTGCCAAGGCTGCTAGACAAGGTGGGTGTAAGAAGATACCAGGAATTTTATATCTTGAGAATTCAGACTTTGCACGGAGAAGCAGATTTGTTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAGAACAATCATCCTTTATGTGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTTTGAAATATCTTATTGATTTTGGAAAGAGAAGGGCTATTCCGGATGTTGTTATTAAACATGGCTCTCTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTAGAGGAATCTTATGTTCCAATGCATCTTCTAAAGAATTTTGAAGACAAAAGAATTGTTCGCAAATCCACTGATAAGAAACTTGAAAAAATGCTTGAGATTGGTAAAGTAAACAAGAAAATTCCTCAAGAAAGGGGATTTTCATATCTGTTTACTAGATTGGAAAGATCTGATTGTCATCAATGTGGGCACTGCAACAAAGATGTTTCAATGAGGGATGCTGTGAGGTGCCTCCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCAGGTAGCACATCAAATACTGGAAGCACATATTCATGTCACAGATGTCAGGATGGGTTGCATGCAAAGACTAATACCAATAAAAGAAAAGTTGGCTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTGTGCCTTCAGTTTGTATGTCAGTAAACCTCAAGGGCAACAAGAAGGCATTGAGTAAGGTACGCCAGGGAAGATCTCGAAACAGTAAGAATATCCAATCAAGTGTACCTCTTCGCCGATCTACTAGGAAGGCCAAATCCCTGTATATGCAAAGTCAAATGAACGGTGGACGCAGAAAAGGAAAGCCCGGTAAAAAGAACGTGGGACGCAAAAAGGGAAAGCAAAGTAAATCCAAGAAGGTGACCTCTCCGGAGTCCAATGAACCTACTGGTGAATATACAAAGTTAGCAGTAACTACACGAGGGACGAGAACAAAGTTCTGTAGCAGTTATTGGCTTAATGGTCTTCGGTTGTCTCGAAAGCCAAATGACGAGCGAGTATTGCTATTTAAAGAGAAGAAGACTATTGTCTCCTCTGAAGACTTTTCTGGCTCTCTTGACTGTCTTAACTGCTGCCTTTGTTGTGGAAATGGATACTCCTTGAATTATATTGCGTGTGAAATATGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATGTGGACAATGTCAAACAACTTATTGGATTTAAGTGCCATGTTTGTCTTGATAGAACTGCTCCAATCTGTCCTCATGTGAAAATTAATGCATTTTCTCGTCCTGAAAGCAGTGCTGCAAATGAGTGTGCAGAGGAATTATCTAATCCTGTTTCTCTTCAACCTTTAAGTGAGGTTTGA 5217 0.4094 MEFVGKTVKKEVKGFGIISGTVKSYDSASGFLEIVYEDGDSEELESSDVASLLQFQPESVKAKPRVGRKPKKRCRVERKRDVGAGSGNVRENLVAEGSGFRGVLDGDVSSGSGGGLDLYSGVLERNLDGIVGNGGNLEGNANGSKEENGVRETLIEETGLEDSLNKSLSGNVSCVKDGLDLNANLDEDLNLDVSNEDRLKRRDCIDLNLDVSNEDDVSRGEAMQRECNFDLNVEVVCEEGKETRCDGDGNGHSLVDNVLFGKMGLSQKEEINVNNSFVEGDGINGNFNHAFDAVKLEVIHVSSDHPSKEGSLCLVEENGGDSRKEDAGTINSHQISSAISVRDSDFGERVDCPSEGGIAIIHEYQDDPGSPCKQEKFLDVSGSPCKQKNSRRKRRKLSDNPGAMPETVLRRSSRRASARKGVSSTLEVEVADDALVTLGTDVLTEEKPLILVSQKSEQYNNDLRYRQCNNLLPKLQLPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSLLFDSIHVSILQTLRKQLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHDSGFKTGFDIKHLMFRTDYYRQPVMVKVEILQYLCDDMIESEAIRSELNRRSLVTETDMGFDQNMYFDASKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRAWMKSRRSLRGADLLGMDMDGSVYFNSCSYLLVSSSSEARPLFYYYHRNDIHVVIEALKSMGPLYRGILMAIYKHWDIKANLNVGDSVFNQNSGKNMQMKGEYSTMYTSLAPSTSEICLDNNQANDQGKLDENSTVDCCMQLGQEFPKVGNCLDSTITIESPCVASDGSADTTQTRTGTNNVQTCGLNDFNRCNESLNQPGVPERHYPDCSLTSSSLDVGHKINLRSVGASSTPSPDSKDNSEGPCGTEYVNYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEFISDQTKVIMKKSTNFCWPSIPELDAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEVSNSTSVGLQPRNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQINLWHKDLLKTSDFLRVKRLLLLLESNLRPFALSADWLKHVDSVPTMGSAIHIVVSRTSSRHGIAKKRARYSDNETSSSSNSASGLGMYWWRGGRLSRKLFNLKVLPHSLVAKAARQGGCKKIPGILYLENSDFARRSRFVAWRAAVEMSTSAEQLALQVRELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCTEGQSLKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEDKRIVRKSTDKKLEKMLEIGKVNKKIPQERGFSYLFTRLERSDCHQCGHCNKDVSMRDAVRCLHCKGYFHKRHVRKSGSTSNTGSTYSCHRCQDGLHAKTNTNKRKVGSKLQKIQAKKRKTVPSVCMSVNLKGNKKALSKVRQGRSRNSKNIQSSVPLRRSTRKAKSLYMQSQMNGGRRKGKPGKKNVGRKKGKQSKSKKVTSPESNEPTGEYTKLAVTTRGTRTKFCSSYWLNGLRLSRKPNDERVLLFKEKKTIVSSEDFSGSLDCLNCCLCCGNGYSLNYIACEICGDWFHGDAFGLNVDNVKQLIGFKCHVCLDRTAPICPHVKINAFSRPESSAANECAEELSNPVSLQPLSEV 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01680 1738 MobiDBLite consensus disorder prediction 1479 1595 - -
Vian5g01680 1738 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 602 634 IPR028942 -
Vian5g01680 1738 MobiDBLite consensus disorder prediction 1523 1553 - -
Vian5g01680 1738 SUPERFAMILY FYVE/PHD zinc finger 1420 1481 IPR011011 -
Vian5g01680 1738 Pfam PHD-finger 686 727 IPR019787 -
Vian5g01680 1738 CDD PHD1_AIRE 685 727 - -
Vian5g01680 1738 MobiDBLite consensus disorder prediction 1482 1496 - -
Vian5g01680 1738 SUPERFAMILY FYVE/PHD zinc finger 669 728 IPR011011 -
Vian5g01680 1738 PANTHER PHD FINGER FAMILY PROTEIN 2 1701 - -
Vian5g01680 1738 ProSitePatterns Zinc finger PHD-type signature. 686 727 IPR019786 -
Vian5g01680 1738 SMART PHD_3 1425 1472 IPR001965 -
Vian5g01680 1738 SMART PHD_3 1650 1696 IPR001965 -
Vian5g01680 1738 SMART PHD_3 685 728 IPR001965 -
Vian5g01680 1738 MobiDBLite consensus disorder prediction 1579 1595 - -
Vian5g01680 1738 CDD PHD_SF 1426 1471 - -
Vian5g01680 1738 MobiDBLite consensus disorder prediction 1558 1576 - -
Vian5g01680 1738 ProSiteProfiles Zinc finger PHD-type profile. 683 730 IPR019787 -
Vian5g01680 1738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 748 IPR013083 -
Vian5g01680 1738 MobiDBLite consensus disorder prediction 375 422 - -
Vian5g01680 1738 Pfam DDT domain 492 544 IPR018501 -
Vian5g01680 1738 SMART testlast3 488 548 IPR018501 -
Vian5g01680 1738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1643 1702 IPR013083 -
Vian5g01680 1738 SUPERFAMILY FYVE/PHD zinc finger 1637 1698 IPR011011 -
Vian5g01680 1738 ProSiteProfiles DDT domain profile. 488 548 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01680 Vian-Chr5 39231283 39243731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01680 1 1707 PHD Transcription Factor Family AT5G12400 39.966 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vian5g01680 DDT 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01680 - - vun:114169688 3141.29