Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01673 ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGACATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAACCTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCCACCGAGGACGACCAGGCCTTCGATCCCCAGCCTCACGCCGGCGAGTCCACCGGCCTCAAACTTCTAGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGATAAACTCGACTTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTGTCTTCTCCGTTCGGTACCTCGCCGGAGCGCGTCGGGGCTTACTTCGCGCAGGCGCTGCAGGCGCGTGTGGTGAGCTCATGCCTCGGCTCGTACTCTCCGCTGACCGCGAAATCTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTACAACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGCTATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCGATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCTCGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTCGGAGCTCCTCGACTCTACCGGGCGGAGACTCGCGGATTTCGCGAGCTCGCTTGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTGACCGAACTGAGTCAACTCGGCGTTCGAGCCAACGAGGCGATCGTGGTGCACTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAGGACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACAGCCTTGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGGAACATCGTGGCCGTGGGCGGGCCCAAGAGAACCGGTGAGGTTAAGGTGGAGCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCCGGGGCAACCCTGCTGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGGAGAGGTTATACGCTGGTCGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAAGGACCTTTCTCTGTTGATTGCCTCTGCTTGGCAGCCCTCTGATTTGATTACTTACCCCGATTGA 1314 0.5845 MLQSLVPRSPRTSNPNDMKTKRPVDTADSPADQPSFKRTNFSADTATEDDQAFDPQPHAGESTGLKLLGLLLQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01673 437 MobiDBLite consensus disorder prediction 1 20 - -
Vian5g01673 437 Pfam GRAS domain family 69 428 IPR005202 -
Vian5g01673 437 ProSiteProfiles GRAS family profile. 58 428 IPR005202 -
Vian5g01673 437 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 56 423 IPR005202 -
Vian5g01673 437 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01673 Vian-Chr5 39149525 39150838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01673 18 431 GRAS Transcription Factor Family AT5G41920 66.508 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian5g01673 GRAS 5.3e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01673 - - pvu:PHAVU_011G024600g 808.135