Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01672 ATGGCCACCATGGAAGACATGAGCATGAGTGGGGAAATTGCACTTCCTGGCTTCCGATTCCACCCCACAGAGGAAGAGCTTCTGGATTTCTATCTTAAGAACATGGTTGTTGGCAAGAAACTCCGTTACGACGTTATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTACCTGATTTAGCTAAGGTTGGGGAGAGAGAATGGTACTTCTTCGTGCCGAGGGACAAGAAGCATGGAAGCGGAGGAAGGCCAAACCGGACCACCGAGAAAGGGTTTTGGAAAGCAACCGGTTCGGACCGGAAAATAGTGACTCTGTCTGATCCCAAACGCATAATCGGGTTAAGGAAGACCCTGGTTTTCTACATGGGAAGAGCTCCCAGTGGCCGCAAAACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCAAATTACCCAAGGAAATAGTGTTGTGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGGAAAGAGCAGAGAGAGAGATGAAGCAAATGGTGGGATCCCCTGCTTCTCCTCCTTCATCGACGGACACCATGTCCTTCAGCAGCCCACAGGAAGAGGCAAACGTGCCCTTGCCTCTGCCCTTGTTGCAGCATGTTCTTAAGAAAGAGTCTGAATCTGAAGAAACAATGGCATGTGTAGTGCCTAAACAAGAGAAAACAAGCAGCAGCAACAACAACAACAAAGGCAGTTGTGGGGCATCTTCCCTACAAATGCCCTTTGGGAAGGACAATCTTCCGGACCTGCAGCTTCCCATGTTGACAGATTGGACCCAAGATACCTTCTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTAACTCCTTCCAACATCTTAAACTTTTACTGA 891 0.4781 MATMEDMSMSGEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPDLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYMGRAPSGRKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEERAEREMKQMVGSPASPPSSTDTMSFSSPQEEANVPLPLPLLQHVLKKESESEETMACVVPKQEKTSSSNNNNKGSCGASSLQMPFGKDNLPDLQLPMLTDWTQDTFWAQLNSPWLQNLTPSNILNFY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01672 296 MobiDBLite consensus disorder prediction 176 201 - -
Vian5g01672 296 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vian5g01672 296 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Vian5g01672 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 231 - -
Vian5g01672 296 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Vian5g01672 296 MobiDBLite consensus disorder prediction 228 252 - -
Vian5g01672 296 MobiDBLite consensus disorder prediction 181 200 - -
Vian5g01672 296 FunFam NAC domain-containing protein 67-like 23 164 - -
Vian5g01672 296 MobiDBLite consensus disorder prediction 229 248 - -
Vian5g01672 296 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01672 Vian-Chr5 39140254 39141457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01672 9 296 NAC Transcription Factor Family AT2G17040 60.345 1.03e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g01672 NAM 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01672 - - gmx:732555 509.605