Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01670 ATGATTAGTGCAAAGAGGCTTATTGAAATGGCAAGAAAGTGGCAGAAAATGGCTGCGGGAAAACGCAAGAGAATTTCATACCCCAGGCAGCAGAATCTTGATCGTGTTCATTCTTCAACACCAAACAAGGGTCACTTCGTGGTTTACAGCGTCGATCATAAGCGATTCGTGGTTCCCATAAAGTACCTCACCACCAGCGTGTTCAAAGAGCTTCTGAAATGGTCGGAAGAGGAGTTTGGTTTACCGTCTGATGGACCCATTACGTTACCTTGTGATAGCGTCTTCTTGGAGTACGTAATCTCGTTGATTCGTGAACATGTTTCCGAAGATGTTGAGAAGGCTTTGATCACTACAATGATTACGTGTCACCACTTGGCATCCTCATCGTCATCATCTTCTTCTCGTAGCAATGGTCTTATGCAGAGCAACGGGCAGATGATTATTTATGGCTTTTGA 456 0.443 MISAKRLIEMARKWQKMAAGKRKRISYPRQQNLDRVHSSTPNKGHFVVYSVDHKRFVVPIKYLTTSVFKELLKWSEEEFGLPSDGPITLPCDSVFLEYVISLIREHVSEDVEKALITTMITCHHLASSSSSSSSRSNGLMQSNGQMIIYGF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01670 151 Pfam Auxin responsive protein 12 103 IPR003676 GO:0009733
Vian5g01670 151 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 129 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01670 Vian-Chr5 39113181 39113636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01670 3 135 Calmodulin-binding Proteins AT4G34750 27.857 1.43e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01670 - - ccaj:109798531 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01670 5 39113181 39113636 Vian5g01670 5 39113181 39113636 ECH