Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01666 ATGGAAACTATTTTCGTCCCCAAACCAGCTTCTCATTCTCACTTCAAAACTAAATTCTCTTCAAACCCCAAACACTTCCTTAAACAACAACCATTTCTCCCCATCCGCCAAAACCCCACGCGCTTCCGCCTCGTCACCGCCGCACTCCAAAACCAACAACAACAACAAGCAGCTTCCAAAGACACCGAAGACGAGTCCTATGGTGAAGTCAAAGGCATAATCGGCAGCAGAGCCCTCGACGCCGCCACCGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGAGCCGTCTTGGGTTCCGGCAGACTTCATAGCCAAAGACGTCGTCGCCGAATACGAAACCCCGTGGTGGACCGCCGCGAAGAAGGCCGATGAGCCCGCGCTGCGGAACCTCCTCGAATCCGCCGACGGCCGTGATGTCGACGCCGTGGACGCCGAAGGTCGTACCGCGCTCCTCTTCGTAGCGGGACTTGGCTCGGAACCGTGCGTGAAGCTACTGGCGGAAGCCGGCGCGAACCTGGACCACCGCGACCGCAGCGGCGGTCTCGCTGCGCTGCACATGGCGGCGGGGTACGTGAGGCCCGGTGTTGCGAAGGTGCTGCTGGATCTGGGCGCGGATCCTGAGGTGGCGGATGACCGTGGAAGAACGGCGTTGGATCTGGCGCGGGAGATTCTGAAGGCGACACCGAAGGGGAATCCGTTGCAGTTCGGGCGCAGGATTGGGCTTGAGGGAGTGGTTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGCGGAGGTGGAGGAGATTCTTGAACGGAGAGGGAAAGGAGAGAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGGTGCGAATGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATCTTGTAAGAGACTACGAGGCTGGCCTTGAATACGCCGTGGCCGAGGCGGTGCTCGCGAAAAGAATCGCTGATGAAGGGACGCCGGAGTTTTTAGTTAAATGGGCCGATTTAGAGGAGCCCACTTGGGAGCCCCAGGAGAATGTGGACCCTGACCTTGTCAAAACTTTTGAGGAAACAAACAACCAGGCCCAGCCCAGTAGTAATGGGTCTGCTGTCGTTGTTTCGCATCAAGATAGCCCGTAA 1131 0.5791 METIFVPKPASHSHFKTKFSSNPKHFLKQQPFLPIRQNPTRFRLVTAALQNQQQQQAASKDTEDESYGEVKGIIGSRALDAATGMEYLIEWKDGHEPSWVPADFIAKDVVAEYETPWWTAAKKADEPALRNLLESADGRDVDAVDAEGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKATPKGNPLQFGRRIGLEGVVRVLEGAVFEYAEVEEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRIADEGTPEFLVKWADLEEPTWEPQENVDPDLVKTFEETNNQAQPSSNGSAVVVSHQDSP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01666 376 ProSiteProfiles Ankyrin repeat profile. 181 213 IPR002110 GO:0005515
Vian5g01666 376 ProSiteProfiles Chromo and chromo shadow domain profile. 308 364 IPR000953 -
Vian5g01666 376 ProSiteProfiles Ankyrin repeat region circular profile. 181 213 - -
Vian5g01666 376 Pfam Ankyrin repeats (many copies) 167 222 IPR002110 GO:0005515
Vian5g01666 376 SUPERFAMILY Ankyrin repeat 113 224 IPR036770 -
Vian5g01666 376 Pfam Chromo (CHRromatin Organisation MOdifier) domain 310 354 IPR023780 -
Vian5g01666 376 PANTHER MYOTROPHIN 47 249 - -
Vian5g01666 376 CDD CD3_cpSRP43_like 305 353 IPR030300 -
Vian5g01666 376 Gene3D - 254 303 - -
Vian5g01666 376 Gene3D - 64 111 - -
Vian5g01666 376 ProSiteProfiles Chromo and chromo shadow domain profile. 258 287 IPR000953 -
Vian5g01666 376 SMART chromo_7 66 118 IPR000953 -
Vian5g01666 376 SMART chromo_7 256 306 IPR000953 -
Vian5g01666 376 SMART chromo_7 307 357 IPR000953 -
Vian5g01666 376 MobiDBLite consensus disorder prediction 354 376 - -
Vian5g01666 376 SUPERFAMILY Chromo domain-like 306 355 IPR016197 -
Vian5g01666 376 Gene3D - 112 253 IPR036770 -
Vian5g01666 376 ProSiteProfiles Ankyrin repeat profile. 147 179 IPR002110 GO:0005515
Vian5g01666 376 Gene3D - 304 356 - -
Vian5g01666 376 SUPERFAMILY Chromo domain-like 64 117 IPR016197 -
Vian5g01666 376 ProSiteProfiles Ankyrin repeat region circular profile. 147 179 - -
Vian5g01666 376 SMART ANK_2a 181 210 IPR002110 GO:0005515
Vian5g01666 376 SMART ANK_2a 112 143 IPR002110 GO:0005515
Vian5g01666 376 SMART ANK_2a 147 176 IPR002110 GO:0005515
Vian5g01666 376 SUPERFAMILY Chromo domain-like 256 304 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01666 Vian-Chr5 39079419 39080549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01666 137 222 CAMTA Transcription Factor Family AT5G09410 38.043 4.83e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01666 K12271 - gmx:100818382 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01666 5 39079419 39080549 Vian5g01666 5 39079419 39080549 ECH