Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01661 ATGGACTTAGCTAATTCCCATGTAGTAGTTGTTGAACAACTTTCGAGATCTGATCATACTAACAAACCAGTCAGTTCCTTGTTAAAGAAATCAGTAAGGCGAAAGTGTTTTGCTTTTACTGGTGCACATGAGATTTTCCGACCAGAGATGTGGAAAGCAGCTTTAACAGAATTAACGGCAACTGCATCTCTGATGTTCACCTTGACCACTTCCATTGTTGCATGCTTGGACTCACATGAGACTGATCCTAAGCTTCTTGTTCCCTTTGCAGTTTTCATCATAGCCTTTTTGTTCCTAGTTGTGACAGTTCCTCTCTCTGGGGGCCACATGAGTCCCGTTTTCACATTCATTGGTGCTTTGAAGGGTGTTGTCACTCTCACCCGTGCTCTCATTTACGTCTTAGCACAAATCATTGGCTCGATAATCGGTTTCTTTATACTAAAGTGCGTCATAGACCCTAAATTAGCCTACACATATTCCTTGGGAGGTTGTGCCATTGATGGCCAAGGAGTGAGTTTTGGGGTTAAGCCACAGAATGCTTTGCTAGTGGAATTCACATGCACATTTGTGGTACTCTTTGTGGGAGTCACATTGGCATTTGACAAGAAAAGGTCTAGGGAGTTGGGCTTGCCAATGGTGTGTTTGGTGGTGGCAGGATCCATGGCATTGGCAGTGTTTGTGTCCCTAACTGTAACTGGGCGGGCCGGTTATGCTGGTGTGGGCCTCAACCCAGCAAGATGCTTAGGCCCGGCATTGCTTCATGGAGGACCACTCTGGCATGGGCACTGGGTTTTCTGGCTTGGGCCTTTCTTGGCATGCATGGTGTATTATATTGTGTCTATGAACCTTCCAAAGGTGGATTTGATTTGGCTTGAGGGAGAACATGATGTTTATGATAATACTTCTTTCTCAAAGGATCTGCCAGAACAATGCAATGCAGGTTTCCAACTCCAAGTCTGA 960 0.4521 MDLANSHVVVVEQLSRSDHTNKPVSSLLKKSVRRKCFAFTGAHEIFRPEMWKAALTELTATASLMFTLTTSIVACLDSHETDPKLLVPFAVFIIAFLFLVVTVPLSGGHMSPVFTFIGALKGVVTLTRALIYVLAQIIGSIIGFFILKCVIDPKLAYTYSLGGCAIDGQGVSFGVKPQNALLVEFTCTFVVLFVGVTLAFDKKRSRELGLPMVCLVVAGSMALAVFVSLTVTGRAGYAGVGLNPARCLGPALLHGGPLWHGHWVFWLGPFLACMVYYIVSMNLPKVDLIWLEGEHDVYDNTSFSKDLPEQCNAGFQLQV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01661 319 SUPERFAMILY Aquaporin-like 48 279 IPR023271 -
Vian5g01661 319 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01661 319 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01661 319 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01661 319 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01661 319 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01661 319 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01661 319 Pfam Major intrinsic protein 47 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01661 319 Gene3D Glycerol uptake facilitator protein. 12 286 IPR023271 -
Vian5g01661 319 PANTHER AQUAPORIN-LIKE 19 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01661 Vian-Chr5 39053558 39055665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01661 43 287 Major Intrinsic Protein MIP AT3G26520 30.385 1.98e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01661 K09866 - gmx:100804160 503.442