Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01656 ATGGATTGTACAGCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGACTCAATGAACAATTTGTAACGCTGGTCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCGTTATAGATGATACCATTCAATTGCTACAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTGCACTAAATGAAGAATCTTGTGAGTTGGCTCGCGAGAAAAATGATCTTAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAAGTTGAGTTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGTTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATTGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCGGGTAAACTAGAGTCCAGAAACAAATGCAAGGAGAGCATGGTTGAGAAACATGAGGATTCAAATGATGTCACTGCAGACCGGACTTCCGGGTGTTCTGCAGACCAGGATTTGTCATCTGGGCAAATAAAATCTAGCGAATTGTCAAGGAGGCAAAGCATTTGCACTGAAGTGAGTTCGTTAGGTAGGTGCTTGTCATCTAGGAGCGTTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGAATAA 831 0.426 MDCTAARRTQKADREKLRRDRLNEQFVTLVNILDPDRPKNDKATVIDDTIQLLQDLTSQVSKLKDEYAALNEESCELAREKNDLREEKASLKSDIEKLSCQYQQQLRTVSPWTAMDHSVMVVPPSYPYPVPMPIPPSPIAMQPYPFYANQHSAIIPNPCSTYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKLESRNKCKESMVEKHEDSNDVTADRTSGCSADQDLSSGQIKSSELSRRQSICTEVSSLGRCLSSRSVQESSSSSVVHEHKE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01656 276 PANTHER TRANSCRIPTION FACTOR BHLH121 2 275 IPR044579 GO:0003700|GO:0006879
Vian5g01656 276 SMART finulus 12 62 IPR011598 GO:0046983
Vian5g01656 276 MobiDBLite consensus disorder prediction 196 217 - -
Vian5g01656 276 CDD bHLH_AtILR3_like 11 85 - -
Vian5g01656 276 MobiDBLite consensus disorder prediction 218 243 - -
Vian5g01656 276 Gene3D - 4 82 IPR036638 GO:0046983
Vian5g01656 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
Vian5g01656 276 Coils Coil 46 108 - -
Vian5g01656 276 MobiDBLite consensus disorder prediction 184 243 - -
Vian5g01656 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Vian5g01656 276 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01656 Vian-Chr5 39035684 39037126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01656 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.904 7.88e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g01656 HLH 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01656 - - gmx:100817000 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01656 5 39035684 39037126 Vian5g01656 5 39035684 39037126 ECH