Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01645 ATGGCGTCGTCGTCTCTCATTTCCAATATTCTTTTTCTTCTTCTTCTCTCTTTCACCAAAGAAGCTTTATCTGTGTCAAAACTTTCATTGACTGATCATCGTAATTACGTTAGCCGGGAAGTACTGGCAGAACAAGAAGCTGATAGAGTTTATGAATTACCAGGGCAACCACCAGTGAAATTCAAGCAATATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAGGCCACCCATCAACCACACAAAAAACCAGTTCTACTGTGGCTCAATGGAGGCCCAGGTTGTTCCTCGATTGGTTATGGAGAAGCAGAGGAGTTAGGACCCTTCTTTCCTCAGGACAGTTTCCAGCCAAAGCTAAAGTTGAACCCTTATTCATGGAACAATGCCGCGAATCTTTTGTTTTTGGAAAGCCCTGTTGGAGTGGGATTCTCCTACACCAACAACAGCTTTGATTTGAATGAGCTTGGTGACGCCATGACTGCTAAGGATTCACACACCTTCATAGTCAAGTGGTTTAGAAGATTTCCACAATTCAGATCACACGAGTTCTACATTGCTGGCGAAAGCTATGGAGGGCACTACGTTCCACAATTGTCCGAGCTCATTTTCGATCACAATAGCAATCGTGCCAAGAAAGACTACATCAGATTCAAAGGATTCATGATTGGAAATGCAGCAATTGACGACGAAGCAGATCAGAAGGGTTTGGTAGAGTATGCCTGGTATCATGCAGTGATATCCGATGGCTTATATCAGAACATTACAACAAATTGCAATTTCAAATTTGAAAATCAAACAGACGAATGCAATCGCTATGTGGATAAGTTCTTCGTTGCGTATGACGTTATTGACTTATACAGCTTGTACACTCCCACGTGTGTCAGCAACATCAACAGCACAGCCCCTGTCGTCAGAGGCACAACCCCAAAATCTTTCTCCAAAATTAATAAGTGGCATAGAAGACCAGAAGGATATGATCCCTGTGCATCCGATTACACTGAATTTTACCTAAACAGGCCAGAAGTCCAAAGGGCACTACATGCCAATGTCACCAAAATTTCCTATTCATGGAGTCACTGCAGTAACGCTATCCAGGATTGGAATGACTCGCCAGCATCCATTCTTCCTGTCATCAAGAAACTTGCTGCTGGTGGTCTGCGCATTTGGGTTTACAGTGGAGATACTGATGGAAGAGTTCCTGTGACTGGAACAAGATACGCTTTGAAAAAGTTGGGGCTCCCCATTGTTGAAGATTGGACTCCATGGTATACTAGCCAACAGGTTGGAGGATGGAGAACGATTTACGATGGGCTTACTTTTGTGACCATAAGAGGTGCTGGCCATGAAGTTCCGACCTACACTCCCAAACCAGCTCTGCAGCTGCTACGACACTTCCTTGCAAATAAGAAATTACCATCTCAACCAATTTAA 1458 0.4342 MASSSLISNILFLLLLSFTKEALSVSKLSLTDHRNYVSREVLAEQEADRVYELPGQPPVKFKQYAGYITVNETHGRALFYWFFEATHQPHKKPVLLWLNGGPGCSSIGYGEAEELGPFFPQDSFQPKLKLNPYSWNNAANLLFLESPVGVGFSYTNNSFDLNELGDAMTAKDSHTFIVKWFRRFPQFRSHEFYIAGESYGGHYVPQLSELIFDHNSNRAKKDYIRFKGFMIGNAAIDDEADQKGLVEYAWYHAVISDGLYQNITTNCNFKFENQTDECNRYVDKFFVAYDVIDLYSLYTPTCVSNINSTAPVVRGTTPKSFSKINKWHRRPEGYDPCASDYTEFYLNRPEVQRALHANVTKISYSWSHCSNAIQDWNDSPASILPVIKKLAAGGLRIWVYSGDTDGRVPVTGTRYALKKLGLPIVEDWTPWYTSQQVGGWRTIYDGLTFVTIRGAGHEVPTYTPKPALQLLRHFLANKKLPSQPI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01645 485 SUPERFAMILY alpha/beta-Hydrolases 45 480 IPR029058 -
Vian5g01645 485 Gene3D - 383 476 - -
Vian5g01645 485 Gene3D alpha/beta hydrolase 44 304 IPR029058 -
Vian5g01645 485 FunFam Carboxypeptidase 44 304 - -
Vian5g01645 485 FunFam Carboxypeptidase 383 477 - -
Vian5g01645 485 Gene3D - 337 375 - -
Vian5g01645 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 464 IPR001563 GO:0004185|GO:0006508
Vian5g01645 485 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vian5g01645 485 Pfam Serine carboxypeptidase 54 477 IPR001563 GO:0004185|GO:0006508
Vian5g01645 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vian5g01645 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vian5g01645 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vian5g01645 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 447 460 IPR001563 GO:0004185|GO:0006508
Vian5g01645 485 FunFam Carboxypeptidase 333 480 - -
Vian5g01645 485 ProSitePatterns Serine carboxypeptidases, histidine active site. 447 464 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01645 Vian-Chr5 38955460 38958031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01645 342 480 Calmodulin-binding Proteins AT2G22960 28.571 3.43e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01645 K16297 - gmx:100797264 776.548