Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01644 ATGGCTTTGTCTTCACTTATTTCCAATATTGTTCTTCTGCTTCTTTTCTCTTTCAACAAAAAAGCTTTAGCTGTGTCAAAGCTTTCAGTAACTGACAATTATAATTATGTTAGCCGGGAATTACTGGCAGAACAAGAAGCTGATAGAGTTTATACATTACCAGGGCAGCCACCAGTGAAATTCAAACATTATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCATTGTTTTATTGGTTCTTTGAAGCCACTTTCAAACCAGAGGAAAAACCAGTTTTATTGTGGCTAAATGGAGGCCCAGGTTGTTCCTCAATCGGTTATGGAGAAGCAGAGGAGTTAGGACCCTTCTTTCCCCAGAACAGTAGCCAGCCACAGCTAACGTTGAACGCTTATTCATGGAACAATGCTGCCAATCTTTTGTTTATGGAAAGCCCTGTCGGAGTGGGATTCTCCTACACCAACACCAGCAGAGATTTGTACGAGCTCGGTGACGCCATTACTGCTAAGGATTCACACGCCTTCATAGTCAAGTGGTTCGCTAGATTTCCGCAATTCAGAACACACGAATTCTACATTGCTGGCGAAAGCTATGGAGGGCACTACGTTCCACAACTGTCGGAGCTCATTTTCGATAACAATCGCAATCCTGCCATGAAAGACTACATCAACTTCAAGGGATTCATGATTGGAAATGCAGTATTGGACGACGAAACAGATCAAAAGGGTTATGTAGATTATGCCTGGAATCATGCTGTGATATCTGATGGATTATACCATAACATTACAACCAAATGCAATGAATATCTGGATAAGCTCTTCGATGCGTATGACGTTATCGACATTCATAGCTTGTACACTCCCTTATGTCTCAGCAACATCAGCAGCACAACCACAAAAGCTTTTTCCAAAATTAATAAATGGCCTAAAAAGTCAGTTGGGTATGATCCTTGTGCACCCGATTACACTGGAGTTTACCTAAACAGGCCAGAAGTCCAAAAGGCACTACATGCCAATGTCACCAAACTTTCCTATCCATGGACTCATTGCAGTAACATTATCGATGGTTGGAATGACGCACCCGCGTCCATTCTTCCTGTCATCAAGAAGCTTGCTGCTGGTGGTATTCGCATTTGGGTTTACAGTGGAGATACTGATGGATCAGTTCCTGTGACTGGAACAAGATACAGTTTGCAAAAGTTGGGACTGCGCATTGTTGAAGATTGGACTCCCTGGTATACCAGCAAACAGGTTGGAGGATGGAGAACGATTTACGATGGGCTTACTTTTGTGACCATAAGAGGTGCCGGCCATCAGGTTCCGACCTACACTCCCGAACCAGCTCTGCAGCTGCTGCAACACTTCCTTGCAAATCAGAAATTACCATCTCAACCAATTTAA 1404 0.4309 MALSSLISNIVLLLLFSFNKKALAVSKLSVTDNYNYVSRELLAEQEADRVYTLPGQPPVKFKHYAGYITVNETHGRALFYWFFEATFKPEEKPVLLWLNGGPGCSSIGYGEAEELGPFFPQNSSQPQLTLNAYSWNNAANLLFMESPVGVGFSYTNTSRDLYELGDAITAKDSHAFIVKWFARFPQFRTHEFYIAGESYGGHYVPQLSELIFDNNRNPAMKDYINFKGFMIGNAVLDDETDQKGYVDYAWNHAVISDGLYHNITTKCNEYLDKLFDAYDVIDIHSLYTPLCLSNISSTTTKAFSKINKWPKKSVGYDPCAPDYTGVYLNRPEVQKALHANVTKLSYPWTHCSNIIDGWNDAPASILPVIKKLAAGGIRIWVYSGDTDGSVPVTGTRYSLQKLGLRIVEDWTPWYTSKQVGGWRTIYDGLTFVTIRGAGHQVPTYTPEPALQLLQHFLANQKLPSQPI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01644 467 FunFam Carboxypeptidase 365 459 - -
Vian5g01644 467 FunFam Carboxypeptidase 316 462 - -
Vian5g01644 467 Pfam Serine carboxypeptidase 54 459 IPR001563 GO:0004185|GO:0006508
Vian5g01644 467 SUPERFAMILY alpha/beta-Hydrolases 45 462 IPR029058 -
Vian5g01644 467 Gene3D - 319 356 - -
Vian5g01644 467 Gene3D - 365 458 - -
Vian5g01644 467 Gene3D alpha/beta hydrolase 44 293 IPR029058 -
Vian5g01644 467 FunFam Carboxypeptidase 44 293 - -
Vian5g01644 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Vian5g01644 467 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vian5g01644 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vian5g01644 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Vian5g01644 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vian5g01644 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vian5g01644 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 446 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01644 Vian-Chr5 38950160 38953222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01644 323 462 Calmodulin-binding Proteins AT2G22960 29.167 1.15e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01644 K16297 - gmx:100797264 746.888