Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01639 ATGGAGGACGATAAAGTGACAGATTTACCTGGACAACCAGTAGTAAACTTCAATCACTATGCTGGTTACGTGAAGTTAAGACGACAAGAAAAGAAAGCACTGTTTTACTGGTTCTTCGAAGCTCAAGAGGCTTCATCGCATAAACCTCTCGTGCTTTGGCTAACTGGAGGACCTGGTTGTTCGTCTGTTGCTTTTGGAGCAGCACAAGAGATTGGTCCATTTCGTGTAGATGACCATCAGCGTATTACCATCAACAAATTCTCCTGGAATAGAGTTGCCAATATCATATTCTTGGAATCACCTATTAGTGTGGGTTTTTCTTACACTAATAATTCCGATGACTTAAGCAAGCTCGGTGATCAAGTGGTTGCTCTTGATAACTATGCCTTCTTGCTTGGTTGGTTTAAGAGATTTCCAAGATTCAAATCCCATGAATTTTATATCATAGGAGAGAGCTATGGAGGACATTATGCTCCACAGTTGGCTGAGGTTATACATGAAGGGAACAAAAATGGCCCTTACATAAATCTTAAGGGATTCATGATGGGAAACCCTGTGATTAACGATGTGACAGACTTGAAAGGCATATTTGATTTTGCTTTCTATCATGCGATAATTTCAAAGCAAGTGTATGATGGCATAAGAGAGAAATGTGATTTCATGACAAAAAACAATACAAAGGAATGTAGTTGGATCGTGGCCAAATTCGTAAAGGCCTATTCTGACATAGATGTATTTAGTATTTACTCTCCTATTTGTCTGTTGGACTATGAAAGACCAGTTTCAAGTATGTTTGATGGTATCCCGTATACTGTCTCAGAATTTGACCTCCGGAATATGATTCCGACAATGGCTTACGATCCATGTAAAGCTAACGACGTGGAGAAGTATTTCAACAGGAAGGATGTCCAGAAGGCCATTCATGCATACCTCCCTGACATGTTTGATCCCTACACGATATGCAGCACTAAAATTAAAAAATGGAATGATTCACCAAGCACAGTTCTTCCAGTGATTCAGAAACTACTACATGCTGGTTTACGCATTTGGATGTACAGTGGAGACAGTGATGGTAGAGTTCCATGGTTATCAACGAGATACAGTTTGGAAGAGCTGAAAGTGAATGTGACAAGAGAATGGAGAGCTTGGTTTGAAGGAAGAGAAGTTGGAGGATGGGTAGAGGAGTACGAGGGTGGTCTCACTTTTGCCTCCATTAGAGGTGCTGGTCATCAAGCTCCAATTTATAAACCACGAGAAGCTCTTTCTCTCTTCTACCATTTCCTTTCTGGTCAATCGCTTCCTTCTTCTACCTTCTGA 1317 0.407 MEDDKVTDLPGQPVVNFNHYAGYVKLRRQEKKALFYWFFEAQEASSHKPLVLWLTGGPGCSSVAFGAAQEIGPFRVDDHQRITINKFSWNRVANIIFLESPISVGFSYTNNSDDLSKLGDQVVALDNYAFLLGWFKRFPRFKSHEFYIIGESYGGHYAPQLAEVIHEGNKNGPYINLKGFMMGNPVINDVTDLKGIFDFAFYHAIISKQVYDGIREKCDFMTKNNTKECSWIVAKFVKAYSDIDVFSIYSPICLLDYERPVSSMFDGIPYTVSEFDLRNMIPTMAYDPCKANDVEKYFNRKDVQKAIHAYLPDMFDPYTICSTKIKKWNDSPSTVLPVIQKLLHAGLRIWMYSGDSDGRVPWLSTRYSLEELKVNVTREWRAWFEGREVGGWVEEYEGGLTFASIRGAGHQAPIYKPREALSLFYHFLSGQSLPSSTF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01639 438 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 5 417 IPR001563 GO:0004185|GO:0006508
Vian5g01639 438 Gene3D alpha/beta hydrolase 1 255 IPR029058 -
Vian5g01639 438 Gene3D - 289 326 - -
Vian5g01639 438 FunFam Carboxypeptidase 335 430 - -
Vian5g01639 438 ProSitePatterns Serine carboxypeptidases, histidine active site. 400 417 IPR033124 GO:0004185
Vian5g01639 438 SUPERFAMILY alpha/beta-Hydrolases 2 435 IPR029058 -
Vian5g01639 438 ProSitePatterns Serine carboxypeptidases, serine active site. 148 155 IPR018202 GO:0004185
Vian5g01639 438 PRINTS Carboxypeptidase C serine protease (S10) family signature 98 108 IPR001563 GO:0004185|GO:0006508
Vian5g01639 438 PRINTS Carboxypeptidase C serine protease (S10) family signature 400 413 IPR001563 GO:0004185|GO:0006508
Vian5g01639 438 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 159 IPR001563 GO:0004185|GO:0006508
Vian5g01639 438 PRINTS Carboxypeptidase C serine protease (S10) family signature 85 97 IPR001563 GO:0004185|GO:0006508
Vian5g01639 438 Pfam Serine carboxypeptidase 11 430 IPR001563 GO:0004185|GO:0006508
Vian5g01639 438 Gene3D - 335 430 - -
Vian5g01639 438 FunFam Carboxypeptidase 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01639 Vian-Chr5 38919763 38921753 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01639 321 433 Calmodulin-binding Proteins AT2G22960 32.743 3.86e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01639 K16297 - gmx:100799746 619.002