Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01636 ATGGTTTTCACAGACAATGACAGTGCAAATGCAAGTGAAATATATAAAGCTCAAATGCACGTGCACAAATATCTCCTCAGTTTCCAAAGCTGCATGGCGGTGAAGTTTGCGACGGAGCTAGGCATAGCCGATGCAATCCACCGTCACGGAAAACCTATCACTCTCTCCGGCTTGGCGTCAGCTCTGAATCTGCCGCCTTCAAAAGTCGGTGTTCTCCACCGCTTCATGCGCCTTCTAACACACAACGGCTTCTTCATGAAAACACCTTCACAGAACTCTGAAGAAGAAGAAGAAACATATTCTTTGACTCTTGCATCAAAGTTCCTCGTCAGAAGCAACTCCTTCTGCTTGGCACCCAATGCGGAAGTAGCGTTTCATCCAAGTATGTTTAACATGTGGAACTCCTCCAAGAAACTGTTTACAGAAGATACTCAAGTTCCGTTGTTCGAGAGCGTAACCGGAGAGAGTTACTTTGACTTCATCAAAAATGATTTTCAGTTTCTGAATGTATTTCAGAAGGCTGTGGCAGCTGATTCTGAAATGGTCAAACTGGGTCTCCAACAATGCAAGCACGTGTTTGAGGGGTTGGCTTCTCTTGTCGATGTGGGAGGTGGCACTGGTGCAGTCTCCAGGCTCATACTCGAATCCTTTCCTCACTTGAAATGCACCGTCCTTGACCTACCACAAGTTGTGGCCAATTTGAAAACAACCCAAAATCTGAGTTTTGTTGGTGGTGACATGTTTGAATCGATTCCTTCTGCTGATGCAGTTTTACTCAAGGCTGGCTTCACCGGCTGCAAGTTTACTCCAGTATTTGGCTTCAAATCTCTCATCGAAGTTTATCTATGA 849 0.4523 MVFTDNDSANASEIYKAQMHVHKYLLSFQSCMAVKFATELGIADAIHRHGKPITLSGLASALNLPPSKVGVLHRFMRLLTHNGFFMKTPSQNSEEEEETYSLTLASKFLVRSNSFCLAPNAEVAFHPSMFNMWNSSKKLFTEDTQVPLFESVTGESYFDFIKNDFQFLNVFQKAVAADSEMVKLGLQQCKHVFEGLASLVDVGGGTGAVSRLILESFPHLKCTVLDLPQVVANLKTTQNLSFVGGDMFESIPSADAVLLKAGFTGCKFTPVFGFKSLIEVYL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01636 282 PANTHER O-METHYLTRANSFERASE 26 260 IPR016461 GO:0008168
Vian5g01636 282 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Vian5g01636 282 Pfam O-methyltransferase domain 141 260 IPR001077 GO:0008171
Vian5g01636 282 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 262 IPR029063 -
Vian5g01636 282 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 282 IPR016461 GO:0008168
Vian5g01636 282 SUPERFAMILY "Winged helix" DNA-binding domain 12 113 IPR036390 -
Vian5g01636 282 Gene3D Vaccinia Virus protein VP39 111 261 IPR029063 -
Vian5g01636 282 FunFam Coniferyl alcohol 9-O-methyltransferase 4 109 - -
Vian5g01636 282 Gene3D - 3 109 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01636 Vian-Chr5 38890377 38891604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01636 32 260 Monolignol Biosynthesis Gene Families AT5G54160 30.802 5.95e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01636 K22588 - gmx:106795493 309.686