Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01620 ATGGGCAAGTCTAGCAAGAAATCAGCTGTTAAGGTTGATGCCGCTCCAGCTGTTGTTCCGCCATCCAAATCGGCGAAGAAGGGAGGGAAGAGACAAGCTGAAGAAGAAAGTGAGAAGCAAGTGATTGCAAAAAAACAAAAGATAGAGGAGGTTGCTCAGAAACAAAAGAAGGAAGCAAAGCTGCAGAAGAAGGAAAGCAGTTCTGATGATTCTTCATCAGATTCTGAAGATGAGAAACCTGCTGTTAAACCTGCTGCTCTTTCAAAAAAGGTACCCGCTAAAAATGGTGCTTTAAAAGCCCCTGCAAAGAAAGGAAAGCCGGTTTCCAGTTCTTCTGAATCATCTGAAGACGATTCTTCAGAATCTGAGGATGAGAAACCTGTGCCAAAAGCTGTTGTACCTGCACAAAAGGCTCCTGCTAAAAATGGTGCCCCAGCAAAGAAAGGCAAGCCCGCTAGCAGCTCCAGTTCTTCTGAGGATTCTGAAGATGACTCGTCTGAAGAGGAGAAACCTGCTGCCAAGAATGGCTCTGTAACTGCCTCTGCAAAGAAAGGCAAGCCAGCTGCAGCTGCAAGCTCTTCTGATTTATCTGAGGAATCCTCTGACGAGGATGATGTTCCAAAAACTAAGGCGGTCCCTGCTGCAGCAAAGAATATAACTTCTTCTAACAAGAAAACTCAGCCTAGTGGAAGTTCTGATTCTGATAGCAGCTCTGATGAGGACGATAAAAAGAAAATATCTACAACTACAAAGCTGCCTGCTTCATCAGTTGCTCCAGTTAAGAAAGTGGTAAGCTCAGACGATGATTCAAGTGAAGACTCTGATGAAGACGATGATGTCAAGCCCTCTGCAACTGCTGTGTCAAAGCCTGCTGTGTCAAAGAAGAAAGTTGATAGTTCTGATTCTGATGATAGCAGCTCTGATGAAGACAATATGAAGGCTGCCAAAAAGGTTTCCAATGCCAAGTCAGTGCCTGTGTCTAAGCAGCCTGTTAAGACCTCAAGTACTAGTGATTCAGATGAAGAGGATTCTTCTGAAAGTGACTCTGAAGAGGAAAAGAAAACTGCAAAACCTGCTAATCTTAGCAAGAAACAAGCTGCTGTAGTGAAGACCCCTAAAAAAGGTTCTACTGAAAGTTCATCAGAGAGTGATTCTTCAGATGACGAGGGGAAGAAGATGGATATAGACGAAGAAGATAGTTCTGATGAAAGTGAAAAGCCACAGAAGGCTGTGAAAAATGTGAAAGAAAGCAGTGACAGTTCAGAGGAAGAAAGTGAGGACGAACCCTCCAAAACACCGCAAAAAAGAGCTAGGGATGTGGAGATGTTAGATACTGTTTCATCCGGAAAGAAAACTCCCAATACTCCAATTACACCAAATGCAGAAAGCGGTGCTTCAAATACTCTTTTTGTTGGGAACCTAGCATACAGTGTTACCCGAGCTGATGTGGAAAATTTCTTCCAGGATTGTGGAGAAGTTGTTGATGTTCGTCTTGCAACAGATGAAGAAGGAAGGTTTAAAGGATTTGGACATGTTGAGTTCGCAACAGTTGAAGCTGCCCAGAAAGCTCTTGAGTTGAATGGAGAAGAATTATTGAATCGTCCACTGCGGCTGGATTCAGCCAAGTCCCGGGACAGGGGTGCTTATACTCCCAATAGCAACAATTGGAAAGACTCATCTCAGAGAAGTGGAAGAGGCCAGTCTCTTACCCTTTATGTAAGGGGTTTTGATAAAACAATTGGGGAAGATGCGATAAGAGCTAGTTTGGAGGAACATTTTGGTTCTTGTGGAGATATTACAAGGGTGTCAATTCCGAAAGATTACGATACTGGTGCTGTCAAGGGGTTTGCTTACATGGACTTTGGTGATGCTGATAGCATAAGCAAAGCTCTAGAACTCCATGAAACTGACCTTGGTGGTTATACCCTCACAGTTGATGAAGCCAAGCCTAGGGAGCCTAGGGATAATCAAGCCTCTGGGGGAAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGGTTTGGTGGAAGAGGTGGCAGTGGAGGTAGATTTGGAGGCAGTGGTGGAGGTAGATTTGGAGGCAGTGGTGGTGGCCGGTTTGGTGGAAGTGGAAGAGGTGGTGGTGGTAGATTTGGTGGAAGAGGCGGTGGTGGAAGAGGTCGTGGACCTCCAAATAGATCCATGGCGGAAGGCACAGGAAAAAAGACCAAGTTTGCCGATGAAGACTAG 2226 0.4515 MGKSSKKSAVKVDAAPAVVPPSKSAKKGGKRQAEEESEKQVIAKKQKIEEVAQKQKKEAKLQKKESSSDDSSSDSEDEKPAVKPAALSKKVPAKNGALKAPAKKGKPVSSSSESSEDDSSESEDEKPVPKAVVPAQKAPAKNGAPAKKGKPASSSSSSEDSEDDSSEEEKPAAKNGSVTASAKKGKPAAAASSSDLSEESSDEDDVPKTKAVPAAAKNITSSNKKTQPSGSSDSDSSSDEDDKKKISTTTKLPASSVAPVKKVVSSDDDSSEDSDEDDDVKPSATAVSKPAVSKKKVDSSDSDDSSSDEDNMKAAKKVSNAKSVPVSKQPVKTSSTSDSDEEDSSESDSEEEKKTAKPANLSKKQAAVVKTPKKGSTESSSESDSSDDEGKKMDIDEEDSSDESEKPQKAVKNVKESSDSSEEESEDEPSKTPQKRARDVEMLDTVSSGKKTPNTPITPNAESGASNTLFVGNLAYSVTRADVENFFQDCGEVVDVRLATDEEGRFKGFGHVEFATVEAAQKALELNGEELLNRPLRLDSAKSRDRGAYTPNSNNWKDSSQRSGRGQSLTLYVRGFDKTIGEDAIRASLEEHFGSCGDITRVSIPKDYDTGAVKGFAYMDFGDADSISKALELHETDLGGYTLTVDEAKPREPRDNQASGGRGGGGRGGGGRFGGRGGSGGRFGGSGGGRFGGSGGGRFGGSGRGGGGRFGGRGGGGRGRGPPNRSMAEGTGKKTKFADED 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01620 741 MobiDBLite consensus disorder prediction 447 463 - -
Vian5g01620 741 SMART rrm1_1 468 539 IPR000504 GO:0003723
Vian5g01620 741 SMART rrm1_1 570 646 IPR000504 GO:0003723
Vian5g01620 741 MobiDBLite consensus disorder prediction 1 463 - -
Vian5g01620 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 543 IPR000504 GO:0003723
Vian5g01620 741 MobiDBLite consensus disorder prediction 27 84 - -
Vian5g01620 741 MobiDBLite consensus disorder prediction 427 445 - -
Vian5g01620 741 Gene3D - 550 689 IPR012677 -
Vian5g01620 741 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 303 615 - -
Vian5g01620 741 MobiDBLite consensus disorder prediction 294 316 - -
Vian5g01620 741 Coils Coil 34 65 - -
Vian5g01620 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 569 650 IPR000504 GO:0003723
Vian5g01620 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 582 643 IPR000504 GO:0003723
Vian5g01620 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 537 IPR000504 GO:0003723
Vian5g01620 741 CDD RRM1_NUCLs 468 544 IPR034349 -
Vian5g01620 741 MobiDBLite consensus disorder prediction 542 563 - -
Vian5g01620 741 MobiDBLite consensus disorder prediction 402 419 - -
Vian5g01620 741 SUPERFAMILY RNA-binding domain, RBD 566 680 IPR035979 GO:0003676
Vian5g01620 741 MobiDBLite consensus disorder prediction 546 563 - -
Vian5g01620 741 MobiDBLite consensus disorder prediction 215 234 - -
Vian5g01620 741 Gene3D - 378 548 IPR012677 -
Vian5g01620 741 MobiDBLite consensus disorder prediction 644 741 - -
Vian5g01620 741 CDD RRM2_NUCLs 570 648 IPR034350 -
Vian5g01620 741 SUPERFAMILY RNA-binding domain, RBD 457 565 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01620 Vian-Chr5 38780458 38785808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01620 466 659 Eukaryotic Initiation Factors Gene Family AT4G34110 28.426 7.20e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01620 K11294 - gmx:100786132 439.884