Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01604 ATGGCAACCCATCCTGGAAAACAAGCTCCTTCGAATGGGTCTGTCTATGTATGCAACTTGCCCTACGGGACCGACGAAAATATGTTGGCTGAATATTTTGGCACCATTGGATTAGTGAAGAAAGATAAACGTACTGGGAGACCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTGACGTATGAAGATCCACATGCTGCTATAGCGGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATATAATTGGCGTTTTTATAGCAGAGTCAAAAAACAAGGATGATCAAACTTATAATTCAGCAGGAGTAGAACCAGTAGTTGCTGGTACTGTTGTTGGATTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGCCAAAATGATCCTTCAGGCAAAGCATGGCAACAAGATGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCAATGTGAACTTTGCTTTCCGTGGTGCGTGTAACCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCTGGACAAGAACCAGGGGGTGTTGGCCGGCCAGTTGGTGGAGGACTATTTGGTCCAAATGATTGGCCCTGTCCAATGTGTGGCAATATCAACTGGGCGAAGCGGACTAAATGTAATATTTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAAGAAATAGAAGAAACCAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGCGCCAAAACACAGCAAGCTGAAGCTGCGCGTGGGCTTCCTGGTTCAGGACGTGCTGGTTGGGAGGTTGAAGAACTAGGGATAGACAAGGATGGTAGAGAAAGTAGAGACAGAGGAAGAGAACGTAATGATGGGGAGAGCAGGAGCAGAGAGCGAAGTGACAAAGAGAGGCAAAGCAGTTGGAATAGGGACAGAGACAGGGGAAGAGATCGAGATCGAGACTGGGATTATGTTGACAGAGACAGAGATTATGGACGAGATCGGGACCGTATTGGCCTAATTTTTATCCCTGGACCTTGGTCTAAGAGTGATTTTTTACGAATTGTGCGTTATGGGATTGGGATTTTCAGGCTGCTGCTTGGGTACGGGAGTAGTGTACCAATGAGTTCTCGGACAGGCAAGGGACCTGCTGTCAGAAGCTACCGGAGGAGAAAGGCAGTTTTGGACCTTGACCTTAATCTTGTGCCGGCTAGTGACAATCGTGAGCACGAGGGACCTTCAACACAGTCAGGGCCACTAGGAAGTGATAGTGCTAAAGTGCTTCCTGAACCTCGAATTGAGCCTGTTTTCAACTGTCCAATATGTATGGGTCCTTTGGCAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGCGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 1623 0.4627 MATHPGKQAPSNGSVYVCNLPYGTDENMLAEYFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAIAAVEWFNNKDFHGNIIGVFIAESKNKDDQTYNSAGVEPVVAGTVVGLEETTKDVNGGSGRGRGQNDPSGKAWQQDGDWLCPNTSCSNVNFAFRGACNRCGTARPAGASGISGAGGRGKGRAAGQEPGGVGRPVGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEELGIDKDGRESRDRGRERNDGESRSRERSDKERQSSWNRDRDRGRDRDRDWDYVDRDRDYGRDRDRIGLIFIPGPWSKSDFLRIVRYGIGIFRLLLGYGSSVPMSSRTGKGPAVRSYRRRKAVLDLDLNLVPASDNREHEGPSTQSGPLGSDSAKVLPEPRIEPVFNCPICMGPLAEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01604 540 ProSitePatterns Zinc finger RanBP2-type signature. 219 238 IPR001876 -
Vian5g01604 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 90 IPR000504 GO:0003723
Vian5g01604 540 Gene3D - 12 95 IPR012677 -
Vian5g01604 540 Gene3D - 214 245 - -
Vian5g01604 540 Gene3D - 147 183 - -
Vian5g01604 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Vian5g01604 540 MobiDBLite consensus disorder prediction 245 279 - -
Vian5g01604 540 FunFam Zinc finger Ran-binding domain-containing protein 2 210 244 - -
Vian5g01604 540 FunFam TATA-binding protein-associated factor 2N isoform X1 148 182 - -
Vian5g01604 540 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Vian5g01604 540 SUPERFAMILY RING/U-box 478 529 - -
Vian5g01604 540 MobiDBLite consensus disorder prediction 124 150 - -
Vian5g01604 540 MobiDBLite consensus disorder prediction 450 471 - -
Vian5g01604 540 FunFam HIV Tat-specific factor 1 12 96 - -
Vian5g01604 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 457 539 IPR013083 -
Vian5g01604 540 ProSiteProfiles Zinc finger RING-type profile. 485 523 IPR001841 -
Vian5g01604 540 MobiDBLite consensus disorder prediction 316 365 - -
Vian5g01604 540 MobiDBLite consensus disorder prediction 183 207 - -
Vian5g01604 540 Pfam Zn-finger in Ran binding protein and others 218 244 IPR001876 -
Vian5g01604 540 Pfam Zn-finger in Ran binding protein and others 151 180 IPR001876 -
Vian5g01604 540 ProSiteProfiles Zinc finger RanBP2 type profile. 150 181 IPR001876 -
Vian5g01604 540 CDD RRM_SARFH 15 97 - -
Vian5g01604 540 Coils Coil 259 279 - -
Vian5g01604 540 Pfam Zinc finger, C3HC4 type (RING finger) 484 522 - -
Vian5g01604 540 MobiDBLite consensus disorder prediction 256 279 - -
Vian5g01604 540 MobiDBLite consensus disorder prediction 294 365 - -
Vian5g01604 540 ProSitePatterns Zinc finger RING-type signature. 500 509 IPR017907 -
Vian5g01604 540 ProSitePatterns Zinc finger RanBP2-type signature. 154 175 IPR001876 -
Vian5g01604 540 MobiDBLite consensus disorder prediction 133 150 - -
Vian5g01604 540 SMART zf_4 217 241 IPR001876 -
Vian5g01604 540 SMART zf_4 152 178 IPR001876 -
Vian5g01604 540 SMART ring_2 485 522 IPR001841 -
Vian5g01604 540 ProSiteProfiles Zinc finger RanBP2 type profile. 215 244 IPR001876 -
Vian5g01604 540 SMART rrm1_1 14 95 IPR000504 GO:0003723
Vian5g01604 540 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 104 382 - -
Vian5g01604 540 SUPERFAMILY Ran binding protein zinc finger-like 144 182 IPR036443 -
Vian5g01604 540 SUPERFAMILY Ran binding protein zinc finger-like 211 245 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01604 Vian-Chr5 38574347 38583938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01604 432 539 C3H Transcription Factor Family AT3G07200 52.294 2.50e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01604 - - gmx:100780819 575.859