Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01603 ATGCAACAGCAGCAGCAACAACAGCAACAGCAGAATCCTTCTGCACTGGTGCCGCACTTAAAAATTCCCCAATCCTCCACCTCCACCGTCGCCGCCGCCACCACAACCCCCGCCGCCACTTCCATTAGGTCGCCTTCCTCGCAGTCGCCGCTCTCCGTCGTCGCTCCCCTCCGCCAACCCCCGCTCACCTCGCATCCCTTGCCGGTTACGGCGGTGGAGTCTGCTTTGACGGCGGTACCGACGTGTCCGCTGGTGAGAGTCCGCCTCTCGGACATTGCCCCCTATGACGGGGCACCGGCGGGGTCGTATCTGAGAGCAATGGAGGCGCTGTGTGGGTCTCTGCTGCGGCACAATGCCGCGTTGATCCAATTGGGGAGCGAGGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCACGGTTATTTTTCAGAAGTAGGGCCCAACTTGGTGTTGGAAAGGGTAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTATTCTCCCCCCTGCATGGCTGATATTTATCGATGCATGGGAAAGGTGTCTCGATCTGCCTTGAGTGCCATTGCAAGATATTTACGTCTTAGAAGCGACGTTTTTAACCATTTGCTTGATGATTCTCCGTTGCCTGCTAATGAGGTGTCATCGTCAGTTCTTGTTGCAACATACTCAAATTCTTCTTTGCAAAATGGAAGAGGTGCCATTGGAGGTGGTAAGCCTACCATGAATGGTGAAGTTGAAAAGGGATTGTTGACGTTGATTTCTTCTGACACTCCTGGTCTTCAGATATGTGACCCCAGTGGGCGCTGGTATCTGGCAGACAGTGGTTCTGGGCCTGGAGATCTTTTACTGATAACAGGAAAGGCACTTAGTTATGCTACTGCTGGTCTACGACCTGCAGCATCATATAGAGCTTCTCCTGATTATTTTCTGAGCCCTAATGGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACTGGGCAATGCTATATTAGATTGTTCCCCAATAGCAGCAGCTGGCCATATTATTCCCCAAAGTTATGTTCGAATTTCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAATTGATAGGCAGCAGATGTGATAATGCTGATGTTGCTGCTCAACACAGTATGAACAAGGAGCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGTTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTTATTGAAACATCCAGATGTACTCTCTGCAATACAGAAATTGAAACTGGTTCTTTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGAACGGAGGTTATTTCGTAATGCTGCTCTTCGAAAGCGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTGAACAGGGAAAATGGAGATTATAGTGCTCCTGATGGACTTCAGCGGGGGGTGCAATATCCATTTTCGGTAAACGAGAAAGTTATTATTAAGGGTAACAGAAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTCTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGAAACTGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGGAAGCTCTTAACAGCGGACCAGTGTCCCCCACAACCAATTCAAAATAGTAGCTCTTAA 1746 0.4857 MQQQQQQQQQQNPSALVPHLKIPQSSTSTVAAATTTPAATSIRSPSSQSPLSVVAPLRQPPLTSHPLPVTAVESALTAVPTCPLVRVRLSDIAPYDGAPAGSYLRAMEALCGSLLRHNAALIQLGSEDTALMRCGLEGARLFFRSRAQLGVGKGSRGVYMYRAGRALEDWDYSPPCMADIYRCMGKVSRSALSAIARYLRLRSDVFNHLLDDSPLPANEVSSSVLVATYSNSSLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQICDPSGRWYLADSGSGPGDLLLITGKALSYATAGLRPAASYRASPDYFLSPNGGGRTSLAYRLMPLGNAILDCSPIAAAGHIIPQSYVRISVSQFMDDLAAEELIGSRCDNADVAAQHSMNKEPSLRSVLSDPLSGTFLEDAMFVSCGHSFGGLMLRRVIETSRCTLCNTEIETGSLIPNLALRAAAAAVKHEDERRLFRNAALRKRRKEMGDQMDSMRRVNRENGDYSAPDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEALITSQCLNGWYLLKIIETGENVRLQYRSLRKLLTADQCPPQPIQNSSS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01603 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 463 IPR013083 -
Vian5g01603 581 MobiDBLite consensus disorder prediction 1 54 - -
Vian5g01603 581 Gene3D - 166 372 IPR027443 -
Vian5g01603 581 MobiDBLite consensus disorder prediction 1 57 - -
Vian5g01603 581 SUPERFAMILY Clavaminate synthase-like 175 343 - -
Vian5g01603 581 SUPERFAMILY RING/U-box 394 460 - -
Vian5g01603 581 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 82 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01603 Vian-Chr5 38553666 38567339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01603 394 564 Plant U-box Gene Family AT5G05230 40.351 1.09e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01603 - - vum:124827961 1009.59