Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01590 ATGGCTTCCCTCTATGATGTGCTTGGAATTTCAATTGGCGCAAGCTGCGTGGAAATAAAGGCTGCTTACAGAAAGCTGGCTAGAACTTACCATCCTGATGTTGTGGCCATGAATCAGAAGGAAAGCTCAGCTCACCAATTCATGATGATCCAATCAGCTTACTCAACTTTGTCTGACCCAGAAAAGAGAGCTCAATATGACAGAGATAGTAGATACAGAAGATCATCAGCTATGGCTTCCATGGCAGGAAGAAATCACACATTTTCCTGGGCTGGAGGAAGTGGCAGGAAATGGGAAACCGACCAGTGTTGTCAAGATCAAAATGAAATAGCTATAGGTAGGTTTCTTAGGACTGCCCGTGTTCAAACAAAAACACTTGCTGCTATGATCTTGCCTAAGAAAACAGAGGAATTGGAATTTGTGAAAGGTGAGAATTGA 438 0.4292 MASLYDVLGISIGASCVEIKAAYRKLARTYHPDVVAMNQKESSAHQFMMIQSAYSTLSDPEKRAQYDRDSRYRRSSAMASMAGRNHTFSWAGGSGRKWETDQCCQDQNEIAIGRFLRTARVQTKTLAAMILPKKTEELEFVKGEN 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01590 145 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Vian5g01590 145 Gene3D DnaJ domain 2 119 IPR036869 -
Vian5g01590 145 SUPERFAMILY Chaperone J-domain 2 76 IPR036869 -
Vian5g01590 145 PRINTS DnaJ domain signature 5 23 IPR001623 -
Vian5g01590 145 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vian5g01590 145 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vian5g01590 145 PRINTS DnaJ domain signature 23 38 IPR001623 -
Vian5g01590 145 Pfam DnaJ domain 4 67 IPR001623 -
Vian5g01590 145 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vian5g01590 145 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 80 - -
Vian5g01590 145 CDD DnaJ 5 59 IPR001623 -
Vian5g01590 145 SMART dnaj_3 2 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01590 Vian-Chr5 38442070 38442986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01590 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 2.39e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01590 - - gmx:100798520 152.91