Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01562 ATGGGTTTTGATTTGCTTGGCGTTAGAAGAGCTAGACAAGAAGTTTCAAAGGGTACCGAAGTCCCAAAAGGATACCTTGCAGTGTATGTCGGAGAGAAAAAGAAGAGGTTCGTGATTCCGATTGGATGCTTAAATCAACCCTCGTTCCAGGACTTGCTAAGCAAAGCAGTGGAAGAATATGGGTACCATCATCCAATGGGTGGTCTTACAATTCCTTGCAAAGAAGATGTCTTCTTAAATATCATGTCGGTTCTCACTTGA 261 0.4253 MGFDLLGVRRARQEVSKGTEVPKGYLAVYVGEKKKRFVIPIGCLNQPSFQDLLSKAVEEYGYHHPMGGLTIPCKEDVFLNIMSVLT 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01562 86 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 15 84 IPR003676 GO:0009733
Vian5g01562 86 Pfam Auxin responsive protein 15 85 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01562 Vian-Chr5 38176784 38177044 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01562 20 78 Calmodulin-binding Proteins AT3G43120 55.932 2.88e-16 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01562 K14488 - gmx:112998583 159.073