Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01560 ATGGGTTTCCGTTTTCCTGCCATCCAACGGTCATCGTCATTCACAGCTAGACAAGCATCTTTAAAATCTGAAGACATACCAAAAGGCTATTTTGCCGTGTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTAAGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTCACAATTCCATGCAGTGAAGATGTCTTCCAACATACAATTTCTTGCTTCAAGAGATTGTTCTTCTTCCTTAAACGAGCTCAAAAAATGGGTTTCCGTTTACCTGCTGTCCGACGGGCATCATTGGCAGGCCAAGCTAGAAAGGTTGCGGAAGTCCCAAAAGGCTACCTTGCAATCTACGTTGGAGAGAAAATGAAGAGGTTCATGATTCCCGTATCATTCTTGAACCAGCCTTTATTTCAAGAATTGCTAAAACAAGCTGAAGATGAGTTCGGCTATGATCATCCTATGGGAGGTCTCACAATTCCCTGCAAGGAAGATGTGTTTTTAGATATAGCTTCTCGCTTGAATGTGCAATAG 579 0.4249 MGFRFPAIQRSSSFTARQASLKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQHTISCFKRLFFFLKRAQKMGFRLPAVRRASLAGQARKVAEVPKGYLAIYVGEKMKRFMIPVSFLNQPLFQELLKQAEDEFGYDHPMGGLTIPCKEDVFLDIASRLNVQ 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01560 192 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 88 IPR003676 GO:0009733
Vian5g01560 192 Pfam Auxin responsive protein 118 188 IPR003676 GO:0009733
Vian5g01560 192 Pfam Auxin responsive protein 13 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01560 Vian-Chr5 38167689 38174884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01560 11 92 Calmodulin-binding Proteins AT3G43120 43.902 1.46e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01560 - K14488 aip:110269930 237.654