Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01558 ATGGGTTTCCGTTTACCTACCATCCGAAGGGCACCATTCACAACAAGACAAACAACTTCAAAATCTGAAGACATACCGAAGGGCTATTTTGCAGTTTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTGAGTCATGCAGAGGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTCACAATTCCATGCAGTGAAGATGTCTTCCAACATACAATTTCTTGCTTCAAGGGACAACAAGCTCAAAAAATGGGTTTCCGTTTACCAGCCATCCGACGGGCATCATCATTCACAGCAAGACAAGCATCTTCAAAATCTGAAGACATACCGAAGGGCTATTTTGCCGTTTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCATCATTCCAAGACTTACTGAGTCAAGCTGAGGAAGAGTTTGGATACTATCATCCCATGGGAGGCCTTACAATTCCTTGCAGTGAAGATGTCTTCAAGCACACAATTTCTTGCTTCAATTAA 564 0.4202 MGFRLPTIRRAPFTTRQTTSKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSHAEEEFGYDHPMGGLTIPCSEDVFQHTISCFKGQQAQKMGFRLPAIRRASSFTARQASSKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSQAEEEFGYYHPMGGLTIPCSEDVFKHTISCFN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01558 187 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 87 IPR003676 GO:0009733
Vian5g01558 187 Pfam Auxin responsive protein 15 88 IPR003676 GO:0009733
Vian5g01558 187 Pfam Auxin responsive protein 106 185 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01558 Vian-Chr5 38158578 38161302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01558 14 92 Calmodulin-binding Proteins AT3G43120 45.570 4.51e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01558 - K14488 aip:110269930 246.514