Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01557 ATGGGATTCCGCTTACCTGGTATGAGAAAGGCATCATTTGCTACAAACGAAGCATCTTCAAAAGGTATGGAGGTGGCAAAGGGTCACCTTGCAGTCTATGTTGGAGAGAAAATGAAGCGTTTTGTAATCCCTGTGTCATTCTTGAACCAACCATCATTTCAAGACTTGTTGAGTCAAGCAGTAGAAGAATTTGGGTATGATCACCCAATGGGTGGTCTCACAATTCCTTGCGGAGAGCATGAGTTCTTGGATATCACTTCTCGTTTGATGAGTATCAATACACAAAACATGGGTTTTCGTTTACCTGGTATCAAGAAGGCATCCCTTCATACAATCAAAGCATCTTCAAAAGCTATGGACCTGCCAAAGGGCTACCTTGCAGTCTATGTTGGAGAAAAAATGAAGCGGTTCATGATTCCTGTATCATTTTTGAACCAACCTTTGTTTCAAGATTTGTTGATTCAAGCTGAGGAAGAATTTGGGTATGACCATCCATTGGGTGGTCTAACAATTCCTTGTGGAGAAGATTTGTTCTTAGATATCACTTCTCGCTTAAATAGCTGTTAA 567 0.4074 MGFRLPGMRKASFATNEASSKGMEVAKGHLAVYVGEKMKRFVIPVSFLNQPSFQDLLSQAVEEFGYDHPMGGLTIPCGEHEFLDITSRLMSINTQNMGFRLPGIKKASLHTIKASSKAMDLPKGYLAVYVGEKMKRFMIPVSFLNQPLFQDLLIQAEEEFGYDHPLGGLTIPCGEDLFLDITSRLNSC 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01557 188 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 111 185 IPR003676 GO:0009733
Vian5g01557 188 Pfam Auxin responsive protein 12 88 IPR003676 GO:0009733
Vian5g01557 188 Pfam Auxin responsive protein 108 184 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01557 Vian-Chr5 38134795 38137800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01557 24 82 Calmodulin-binding Proteins AT3G43120 52.542 1.18e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01557 - K14488 pcin:129286196 247.284