Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01556 ATGGGTTTCCGTTTACCTGTCATCCGAAGGGCATCATTCACTGCAAGACAAACAACTTCAAAATCTGAAGACATACCGAAGGGCTATTTTGCAGTTTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTGAGTCATGCAGAGGAAGAGTTTGGGTATGATCATCCCATGGGAGGCCTCACAATTCCATGCAGTGAAGATGTCTTCCAACATACAATTTCTTGCTTCAAGGGACAACGAGCTCAAAAAATGGGTTTCCGTTTACCTGCCATCCGACGGGCATCATCATTCACAGCAAGACAAACATCTTCAAAATCTGAAGACATACCAAAGGGCTATTTTGCCGTTTATGTTGGAGAGAAACAAAATCGCTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTGAGTCAAGCTGAGGAAGAGTTTGGATACGATCATCCCATGGGAGGCCTAAGAATTCCTTGCAGTGAAGATGTCTTCAAGTACACAATTTCTTGCTTCAATTAA 564 0.4202 MGFRLPVIRRASFTARQTTSKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSHAEEEFGYDHPMGGLTIPCSEDVFQHTISCFKGQRAQKMGFRLPAIRRASSFTARQTSSKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLRIPCSEDVFKYTISCFN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01556 187 Pfam Auxin responsive protein 105 185 IPR003676 GO:0009733
Vian5g01556 187 Pfam Auxin responsive protein 11 88 IPR003676 GO:0009733
Vian5g01556 187 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 17 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01556 Vian-Chr5 38128843 38131850 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01556 14 92 Calmodulin-binding Proteins AT3G43120 44.304 1.43e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01556 - K14488 aip:110269930 253.832