Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01555 ATGGGTTTTCGGTTACCTGGTATCAGAAAGGCAACCCTGGCTGCGATACAAGGATCTTCAAAAGTCTTGGATGTGCCAAAGGGCTACCTTGCAGTCTATGTTGGAGAGAAAATGAAACGGTTTGTGATCCCTGTATCATATTTGAACCAACCTTCATTTCAAGATTTGTTGAGTCAAGCTGAGGAAGAATTCGGGTATCACCATCCAATGGGTGGTCTCACAATTCCTTGCAGAGACATATTATTTCTTTGTGGATCAACAAAAACAATGGGTTTCCGCATTCCAGGTATTATTAGACAAGCATCATTTTCTACTGCTAAAACAACTCGCAAGGGACTTGAAGTCCCAAAAGGCTACCTTGCAGTCTATGTTGGAGATAAGATGAGGCGGTTCATGATTCCTGTATCATATTTGAATCAATCTTCGTTTCAACAATTGCTAAGTCAGTCAGAAGAAGAATTTGGATATGATCATCCAACTGGAGGTCTCACAATTCCATGCAAGGAGGAGGAGTTCATAAACGTTATCTCTCATTTGAATTAG 543 0.407 MGFRLPGIRKATLAAIQGSSKVLDVPKGYLAVYVGEKMKRFVIPVSYLNQPSFQDLLSQAEEEFGYHHPMGGLTIPCRDILFLCGSTKTMGFRIPGIIRQASFSTAKTTRKGLEVPKGYLAVYVGDKMRRFMIPVSYLNQSSFQQLLSQSEEEFGYDHPTGGLTIPCKEEEFINVISHLN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01555 180 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 19 83 IPR003676 GO:0009733
Vian5g01555 180 Pfam Auxin responsive protein 19 82 IPR003676 GO:0009733
Vian5g01555 180 Pfam Auxin responsive protein 102 178 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01555 Vian-Chr5 38114044 38123517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01555 24 78 Calmodulin-binding Proteins AT3G43120 58.182 6.49e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01555 - K14488 aip:110269930 236.498