Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01548 ATGATGGAGGAAGGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTTATCATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCTTGTGGGCTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTCGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTGTATGGTCTCATTGTTGGTATCATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA 432 0.4722 MMEEGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01548 143 FunFam V-type proton ATPase proteolipid subunit 1 140 - -
Vian5g01548 143 CDD ATP-synt_Vo_c_ATP6C_rpt2 67 134 - -
Vian5g01548 143 Gene3D - 1 140 IPR035921 -
Vian5g01548 143 Pfam ATP synthase subunit C 75 133 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vian5g01548 143 Pfam ATP synthase subunit C 5 54 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vian5g01548 143 PRINTS Vacuolar ATP synthase 16kDa subunit signature 85 111 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vian5g01548 143 PRINTS Vacuolar ATP synthase 16kDa subunit signature 112 135 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vian5g01548 143 PRINTS Vacuolar ATP synthase 16kDa subunit signature 8 32 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vian5g01548 143 PRINTS Vacuolar ATP synthase 16kDa subunit signature 34 58 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vian5g01548 143 CDD ATP-synt_Vo_c_ATP6C_rpt1 6 58 - -
Vian5g01548 143 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 139 - -
Vian5g01548 143 NCBIfam V-type ATPase subunit C 5 99 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vian5g01548 143 SUPERFAMILY F1F0 ATP synthase subunit C 65 134 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01548 Vian-Chr5 38041042 38041743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01548 2 143 Primary Pumps ATPases(2) AT4G34720 97.887 7.35e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01548 K02155 - aew:130779912 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01548 5 38041042 38041743 Vian5g01548 5 38041042 38041743 ECH