Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01537 ATGGAAGTTGCGGCGGCCGAAGCGCTGAAAACGAGCTTGCGGACAGAGTTCATCTTCCCGCAAGCAATCTGCGACGAGATTTTCTGTTTCAACGCCAACAACATTGTTGTCGGCGAAGATTTCTCCGTCGACGACCTTCTTGACTTTTCCAACGGCGAATTCCAGCTTGGAAAGGATTTCGATGTGTACGAGGAAGAGGAAGACGAGGAAAAAGACAGCACCTCCGGTTCCTCGCAAGACCGAACCGAAGACGACAGCAATTCCAATTCCACCGCCGGCGGCGGCGTTGGCGACTCGGACTCCGTCTTCGCCGGGGAATTGTCAGTTCCTGCGGATGATGTGGCGGACCTGGAATGGGTTTCTCATTTTGTAGACGATTCTCTCCCTGAGCTTTCTCTTTTGTACCCTGTCCCTACGGAACAAACAAGGGTATGGGCCGAAGCAAAACCTAGACCGGGACGGGCCCAAAACGGTTCAGCGATTCCCAGAAGGCCGAGAACCGGAAAGAGTAGGAAGCCCAACGCTCGCGTGTGGTCTTTTACGGTGTCGCCGCCGTCTTTGTGTTTTTCAGTGTTGGCTGGCTCCGTTGAGTTTGGCGAGCCGACGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAATTGGGACCCAGTTTCAGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGTCCACTGGGGCCCAAAACACTCTGTAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTACAGACCGGCCTGTAGCCCAACTTTCTCTGGCGATATTCACTCAAATAGCCATCGTAAGGTGTTGGAGATGAGGCGTAGAAAGGAGACCAGCGAACCGCAAACCGGTTCAGACCGGCCTCAACTGGTCCCAAGCTTTTGA 918 0.549 MEVAAAEALKTSLRTEFIFPQAICDEIFCFNANNIVVGEDFSVDDLLDFSNGEFQLGKDFDVYEEEEDEEKDSTSGSSQDRTEDDSNSNSTAGGGVGDSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVPTEQTRVWAEAKPRPGRAQNGSAIPRRPRTGKSRKPNARVWSFTVSPPSLCFSVLAGSVEFGEPTAKKQKKKAEAQIGTQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKETSEPQTGSDRPQLVPSF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01537 305 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Vian5g01537 305 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Vian5g01537 305 Gene3D - 215 292 IPR013088 GO:0006355|GO:0008270
Vian5g01537 305 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Vian5g01537 305 MobiDBLite consensus disorder prediction 61 102 - -
Vian5g01537 305 FunFam GATA transcription factor 211 297 - -
Vian5g01537 305 SMART GATA_3 216 270 IPR000679 GO:0006355|GO:0043565
Vian5g01537 305 CDD ZnF_GATA 221 278 IPR000679 GO:0006355|GO:0043565
Vian5g01537 305 PIRSF Txn_fac_GATA_plant 3 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vian5g01537 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 277 - -
Vian5g01537 305 MobiDBLite consensus disorder prediction 149 173 - -
Vian5g01537 305 MobiDBLite consensus disorder prediction 80 96 - -
Vian5g01537 305 MobiDBLite consensus disorder prediction 282 305 - -
Vian5g01537 305 PANTHER GATA TRANSCRIPTION FACTOR 31 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01537 Vian-Chr5 37963178 37964241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01537 8 305 C2C2-Gata Transcription Factor Family AT5G66320 39.942 1.04e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian5g01537 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01537 - - gmx:100776188 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01537 5 37963178 37964241 Vian5g01537 5 37963178 37964241 ECH