Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01528 ATGAAGATCCAGTGTGATGTCTGTCACAAAGAAGTCGCCTCCTTCTTCTGCCCTGCAGACGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCTCACAAACACAAACGCCTCTCTCTCAGCCACCCCACCTCCATAGCCGCCACTCTCTGTGATATCTGTCATGAGAAGCGCGCCTATGTCTTCTGCAGAGAAGACAGAGCTCTCCTTTGCAGACAATGTGATGTTTCCATCCATGATGTCAACGAACATACCAAGACGCACGACAGGTTTCTTTTCACTGGAATAACGCTTGAAGAAAAAACCAGAACAACCTCAACCTCGTCAACCTCAAACCCCGCACAAAGTTCACTCTCGAAAGAGAACATTGATTCTTTTGGTTCTTCTCGCACACTTAATAACTCGAGTTCGGTTCTCACTGGAATAACGCTTGAAGAAAAAACCAGAACAACCTCAACCTCATCAACCTCGAACGAAAACATCGATCCTTTTGGTTCTTCTCGCACAGTTTATAACTCGAATTCGGTTTCAACAAGTAGCTTATCCGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTTTAGATGCTTCCTTTGCTGCATCAAATGCTTTCTCTAAGGATTATGAGTTTCCGAATGAAGATGTTCAAGTTAGCATGTGCTCCATCCCACTGCAAACTCAATTTAACACTGCTTCCAATGTTTATCCTGAAATGCCAAAAGCTAAAGCTGGTGAAGGATACTCAGATTGGATTCATAATTCTGATTCCGCAGCCTATAAAGTTCCATCGATTACTTCTCCTTTAGTAAAAAAAATTAAACGCTTTCGTTGA 864 0.4387 MKIQCDVCHKEVASFFCPADEAALCHACDRTIHHANKLAHKHKRLSLSHPTSIAATLCDICHEKRAYVFCREDRALLCRQCDVSIHDVNEHTKTHDRFLFTGITLEEKTRTTSTSSTSNPAQSSLSKENIDSFGSSRTLNNSSSVLTGITLEEKTRTTSTSSTSNENIDPFGSSRTVYNSNSVSTSSLSEYLIQTIPGYCMEDLLDASFAASNAFSKDYEFPNEDVQVSMCSIPLQTQFNTASNVYPEMPKAKAGEGYSDWIHNSDSAAYKVPSITSPLVKKIKRFR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01528 287 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Vian5g01528 287 MobiDBLite consensus disorder prediction 150 170 - -
Vian5g01528 287 CDD Bbox1_BBX-like 5 47 - -
Vian5g01528 287 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vian5g01528 287 CDD Bbox1_BBX-like 57 100 - -
Vian5g01528 287 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vian5g01528 287 Gene3D Classic Zinc Finger 1 96 - -
Vian5g01528 287 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vian5g01528 287 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vian5g01528 287 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 245 - -
Vian5g01528 287 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01528 Vian-Chr5 37843579 37844659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01528 1 217 C2C2-CO-like Transcription Factor Family AT1G75540 44.196 1.10e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vian5g01528 zf-B_box 7.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01528 - - var:108340015 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01528 5 37843579 37844659 Vian5g01528 5 37843579 37844659 ECH