Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01524 ATGGCTTCCGATTCTTCTCCGAATTTCAACAACGGTCCTTCTTCCCCCGACGACTCCCTTTCCAGCCCCATCGGCAACACCTTCTCTTCTCCGGGAAGTAGGCGCCGCCGCCGCCGCTCCTCCACTCCCTCCGCATTCGCCACTCCGTCGGAGCGTCGATCTCGATTCGCCTCCTCCGAAGCCACCCCAACCGCGCCGCGCTCCCGCCATGGCGTCGGCGGAGGTGGGCGCGTTCCCGTCACACCTACATCCACAACAGATGACGCGGCGGCCTCGTCTGACGGCGGCGATGGCTACGACATGGACGACGCCAGGCCCACCTTTGTGTGGGGCACTAACATAAGCGTGGAAGACGTGAACGATGCGATTCACAGGTTTTTGAGGGACTTTAGGGAAGTGTCTTCGTCGCAGGGTGAGGATGACGGGTTGAACTTGCACACCGAAGGGAAGTATGAGAAATTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGACGTTAATGCGCGTGACGTGTTTGATCATGACCCTGATTTGTACACCAAGATGGTTAGATACCCACTTGAGGTGCTTGCTATCTTTGACTTGGTTTTGATGAATATGGTTAGCCGATTGAAGCCGATGTTTGAGAAGCACATTCAAACTCGGATTTTCAATCTCAAACACTCAACCTCAATGAGAAATTTGAACCCTTCTGATATTGAGAGGATGGTGTCATTGAAAGGAATGATTATAAGGTGTAGTTCAATTATACCTGAAATTAGGGAAGCCATATTTAGGTGTCTTGTGTGTGGATTTTGCTGTGACCCAATTCCTGTGGAGAGAGGACGAATAACGGAGCCCACTAGATGTCTGAGGGAAGAATGTCAATCCAGGAACTCCATGACACTTGTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGACCAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGCTACATGATAAGCTGGTGGATACTGGAAAGCCAGGTGATAGAGTTGAGGTGACTGGTATCTATAGGGCTATGAGTGTTAGGGTTGGGCCAACTCAGAGGACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACCGATAAATCTAGGATGCAGGTAGAGGACGCTATGGATATTGATAGTGGCCCTGGCAGAAATGAAGAGGAAGTTGTCTTTGAAGAAGATAAAGTGGCTCGATTGAAGGAGATCTCGACACGGCCAGATATATATGAAATACTGACAAAGTCATTGGCACCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCATTGAAATTGGCTTCTGGTGCCAGCTTCCGTGGTGATATAAATATTCTCCTAGTTGGTGATCCTGGGACTAGCAAGTCCCAGCTACTCCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGCGGAAGGGGAAGCTCTGCAGTTGGATTGACAGCATATGTAGCCAAGGACCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATCTGTTGTATTGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATAATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGTTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCGCCCACACTTCTGTCCAGGTTTGATTTAATCTACTTGATCCTTGACAAGGCTGATGAGCAAACTGACAGGCGCCTTGCTAAACATATTGTGTCCCTACACTTCGACAATCCCGAGAATATGGAGCAGGATGTGTTGGATCTTTCTACATTAACAGATTATGTTAGCTATGCCCGGAAGTACATACACCCTCAACTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTGGAAATAAGGAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCGAGGCAGATTGAGAGTGTGATTCGTCTAAGTGAAGCATTGGCTCGTATTCGCTTTTCGGAATGGGTCGAAAAGAATGATGTAACGGAGGCTTTCAGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACCATTGATATGGATCTTATTACTACTGGAGTGTCGGCAAGTGAGAGGATAAGACGAGAAAGTTTGCTGCAAGCAACACGCAACTTAATCATGGAGAAGATGCAGATTGGGGGACCTTCTATGCGGTTATTAGAGTTATTGGAAGAATTGAAGAAACAGGAGACTGGTGTTAGCGAAGTTCATCTCAATGATCTAAGAAATGCAATAGCTACCCTGGCTACCGAAGGATTTGTTAGCATGCACGGTGACAGCCTAAAAAGATCTTAA 2514 0.4654 MASDSSPNFNNGPSSPDDSLSSPIGNTFSSPGSRRRRRRSSTPSAFATPSERRSRFASSEATPTAPRSRHGVGGGGRVPVTPTSTTDDAAASSDGGDGYDMDDARPTFVWGTNISVEDVNDAIHRFLRDFREVSSSQGEDDGLNLHTEGKYEKLIRQVIEVEGDSLDVNARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLKPMFEKHIQTRIFNLKHSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCCDPIPVERGRITEPTRCLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDQIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMQVEDAMDIDSGPGRNEEEVVFEEDKVARLKEISTRPDIYEILTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPENMEQDVLDLSTLTDYVSYARKYIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESVIRLSEALARIRFSEWVEKNDVTEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERIRRESLLQATRNLIMEKMQIGGPSMRLLELLEELKKQETGVSEVHLNDLRNAIATLATEGFVSMHGDSLKRS 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01524 837 MobiDBLite consensus disorder prediction 1 101 - -
Vian5g01524 837 ProSiteProfiles MCM family domain profile. 426 632 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 FunFam DNA helicase 254 306 - -
Vian5g01524 837 Gene3D - 254 306 - -
Vian5g01524 837 Pfam MCM P-loop domain 414 636 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 Pfam MCM N-terminal domain 122 220 IPR027925 -
Vian5g01524 837 CDD MCM4 429 738 - -
Vian5g01524 837 Pfam MCM OB domain 227 356 IPR033762 -
Vian5g01524 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 752 IPR027417 -
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 740 749 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 300 312 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 249 262 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 588 605 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 442 453 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian5g01524 837 SMART mcm 223 740 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 579 591 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 606 614 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 527 541 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 467 482 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 555 568 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 Gene3D - 227 366 IPR012340 -
Vian5g01524 837 MobiDBLite consensus disorder prediction 42 65 - -
Vian5g01524 837 MobiDBLite consensus disorder prediction 1 31 - -
Vian5g01524 837 Gene3D - 410 744 IPR027417 -
Vian5g01524 837 SUPERFAMILY Nucleic acid-binding proteins 144 377 IPR012340 -
Vian5g01524 837 FunFam DNA helicase 407 745 - -
Vian5g01524 837 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 120 791 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian5g01524 837 Pfam MCM AAA-lid domain 652 738 IPR041562 -
Vian5g01524 837 Gene3D - 745 830 IPR036388 -
Vian5g01524 837 Gene3D - 113 221 - -
Vian5g01524 837 ProSitePatterns MCM family signature. 535 543 IPR018525 GO:0003677|GO:0005524|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01524 Vian-Chr5 37801115 37806268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01524 1 836 Core DNA Replication Machinery Family AT2G16440 73.474 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01524 K02212 - gmx:100782586 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01524 5 37801115 37806268 Vian5g01524 5 37801115 37806268 ECH