Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01517 ATGAGAAAGGGAATAGTAGTAGTAGTAGGAAGCAACACAGACATGAGAAGCTCAGCGTCTTACACGCTACTGTTGTTTCTTTTCGTATGGTTCCGCCTGGCCGAGTGTTCTTCTTTCAGTGACATGGATGCGCTGCTGAAGATGAAGGACTCCATGAAGGGACACAAAGCCAAAGAAGATGCGCTCAGCGACTGGAAGTTTTCCACCTCGCTTTCCGCACACTGTTCATTTTCTGGCGTCCAATGCGACCAAGACCTTCGAGTCGTTGCCATCAACGTCTCCTCCCTTCCACTCTTCGGCCACCTTCCGCCGGAGATTGGACAGTTTGACAAACTCCAAAACCTAACCATCTCGCAGGACAACCTCACCGGCGAGCTTCCCAAGGAGCTCGCTGCCCTCGCTTCCCTCAAGCTCCTCAACATCTCCCACAACAGCTTCTCCGGTGGTTTCCCCGGCCAAATCGTTCTCCCCATGACCCAACTCGAGGTCCTCGACGCCTACGACAACAACTTCACCGGACCGCTTCCGGAGGAATTCGTGAAACTGGAGAAACTCCGATACCTCAAGCTCGATGGAAATTACTTTTCCGGCAGCATACCGGAGAGATACTCGGAGTTTGGGTGCTTGGAGTTTTTAAGCTTAAGCACTAACAGTCTGTCGGGGAAGATTCCCAAGAGTTTGTCTCGGTTGAAGACGCTGAAGTTTCTAAAACTTGGATACAACAACGCTTACGAAGGTGGGATCCCACCGGAGTTCGGAGCCATGAAATCACTGAAATACCTTGACCTCTCCAGCTGCAACCTCAGCGGAGAGATTCCACCGAGCCTGAGCAGTTTAAAGAACCTTGACACGTTGTTCTTGCAAATGAACAACCTCACAGGAACTATTCCTTCGGAACTCTCTGCCATGGAGAGCCTCATGTCAATGGATCTCTCCTTCAACGGTCTCACCGGAGAGATTCCTGAGAGTTTCTCCCAGCTGAGAAACCTAACTCTGATGAACTTCTTCCACAACAAGCTGCGTGGTTCTGTTCCCCTCTTCGTCGGCGAGCTTCCGAATCTGGAAACGCTGCAGCTCTGGGAGAACAACTTGTCCTTCGTGCTGCCCCAGAATCTTGGCCAAAACGGGAAGTTCAAGTTCTTCGACGTCACGAGCAATCACTTCACCGGGTTGATCCCTCCGGGTCTGTGCAAGAGTGGGAGGTTACAAACCTTCGTCATCACCGATAACTTCTTCCACGGTCCAATCCCCGATGACATTGGAAACTGCAAGTCACTCGTCAAGATCCGAGCCTCCAATAACTACCTTAGCGGCGCCATTCCGTCGGGAATTTTCAAACTGCCTTCCGTCAAAATAATCGAGCTCGCCAACAACCGTTTCGACGGCGAACTACCTCCCGAGATTTCCGGCGATTCTCTCGGGATTCTCACGCTTTCCAACAACTTACTGACGGGGAGAATTCAACCGGCCTTGAAGAACTTGAGGGCACTGCAGACACTCTCACTCGACGCCAACGAGTTCGTTGGAGAAATCCCGGCGGAGGTTTTTGTCTTACCGATACTGACCTCCGTCAACATAAGCGGCAACAATCTCACGGGTGAAATCCCCACGACGTTGATTCACTGCGTTTCACTCAACTTCGTTGACCTCAGTCGGAACATGCTGGTGGGGGAGATTCCCAAGGGCATAAAAAACCTGACGAGCTTGAGCGTTTTAAATGTTTCTCAAAACCTGATAACAGGACCAATCCCCGACGAGATTCGCTTCATGTCTAGCCTCACAACGCTGGATCTCTCCTACAACAATTTCAACGGCAAGCTCCCAACCGGCGGTCAGTTTTTGGCCTTCAGCGACAGGTCCTTCGCGGGGAACCCCAATCTCTGTTCCTCCCGCTCTTGCACCAGTTCCTCCATGTACCCAGACGACGCCTTCCAGAAAAGGCGAGGCCCATGGAGTTCGAAATCGACGAGGGTGATAATAAGCGTGATTGCACTAGCCACCGCGGCGCTGCTGGTGGCAGTGACGGTGTACATGATGCGAAGGAGGAAGCTGCTCCGGGCGATGACGTGGAAGCTGACGGCGTTCCAGCGGCTGAACTTGAAAGCGGAGGACGTGGTGGAGTGTCTGAAGGAGGAGAACATAATAGGAAAAGGAGGCGCGGGGATCGTGTACCGGGGGTCGATGCCGAACGGAAGCGACGTGGCCATAAAGCGGTTGGTCGGGGCGGGTAGCGGGAGGAACGATTACGGGTTCAGGGCGGAGATAGAGACGCTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTGGGTTACGTGTCGAACAAGGAGACGAACTTGCTGCTCTACGAGTACATGCCGAATGGAAGCTTAGGGGAATGGCTGCATGGAGCGAAAGGAGGGCATTTAAGATGGGAGATGAGGTTCAAGATTGCAGTTGAAGCTGCAAGAGGACTCTGTTACTTGCACCATGATTGTTCTCCTCTCATCATTCACAGAGACGTCAAATCCAACAATATATTGCTCGACGCCGACTTCGAGGCCCATGTCGCCGATTTCGGACTCGCCAAGTTCCTCCACGATCCCGGCGCCTCTCAGTCCATGTCCTCCATCGCCGGCTCCTACGGCTACATTGCTCCAGAGTATGCATACACGTTGAAAGTGGACGAGAAAAGCGATGTGTACAGTTTCGGGGTGGTGCTGTTGGAGCTGATAATAGGGAGGAAGCCGGTGGGGGAGTTTGGAGACGGAGTGGACATCGTTGGATGGGTGAACAAGACGAGAATGGAGATATCTCAGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGATCCAAGGCTGAGTGGGTATCCATTGACAAGTGTCATTTACATGTTCAACATTGCTATGATGTGTGTTAGGGAAATGGGCCCCGCCAGGCCCACCATGAGGGAAGTCGTTCATATGCTCACCAATCCTCCTCGCTCCACCACTCACTCACACTCACAGCCTCATTAA 3000 0.526 MRKGIVVVVGSNTDMRSSASYTLLLFLFVWFRLAECSSFSDMDALLKMKDSMKGHKAKEDALSDWKFSTSLSAHCSFSGVQCDQDLRVVAINVSSLPLFGHLPPEIGQFDKLQNLTISQDNLTGELPKELAALASLKLLNISHNSFSGGFPGQIVLPMTQLEVLDAYDNNFTGPLPEEFVKLEKLRYLKLDGNYFSGSIPERYSEFGCLEFLSLSTNSLSGKIPKSLSRLKTLKFLKLGYNNAYEGGIPPEFGAMKSLKYLDLSSCNLSGEIPPSLSSLKNLDTLFLQMNNLTGTIPSELSAMESLMSMDLSFNGLTGEIPESFSQLRNLTLMNFFHNKLRGSVPLFVGELPNLETLQLWENNLSFVLPQNLGQNGKFKFFDVTSNHFTGLIPPGLCKSGRLQTFVITDNFFHGPIPDDIGNCKSLVKIRASNNYLSGAIPSGIFKLPSVKIIELANNRFDGELPPEISGDSLGILTLSNNLLTGRIQPALKNLRALQTLSLDANEFVGEIPAEVFVLPILTSVNISGNNLTGEIPTTLIHCVSLNFVDLSRNMLVGEIPKGIKNLTSLSVLNVSQNLITGPIPDEIRFMSSLTTLDLSYNNFNGKLPTGGQFLAFSDRSFAGNPNLCSSRSCTSSSMYPDDAFQKRRGPWSSKSTRVIISVIALATAALLVAVTVYMMRRRKLLRAMTWKLTAFQRLNLKAEDVVECLKEENIIGKGGAGIVYRGSMPNGSDVAIKRLVGAGSGRNDYGFRAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLRWEMRFKIAVEAARGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLHDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRMEISQPSDAALVLAVVDPRLSGYPLTSVIYMFNIAMMCVREMGPARPTMREVVHMLTNPPRSTTHSHSQPH 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01517 999 Pfam Leucine rich repeat N-terminal domain 40 83 IPR013210 -
Vian5g01517 999 Gene3D Transferase(Phosphotransferase) domain 1 786 997 - -
Vian5g01517 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 243 347 - -
Vian5g01517 999 Gene3D Ribonuclease Inhibitor 157 243 IPR032675 -
Vian5g01517 999 Pfam Leucine Rich Repeat 257 279 IPR001611 GO:0005515
Vian5g01517 999 Gene3D Ribonuclease Inhibitor 342 639 IPR032675 -
Vian5g01517 999 SUPERFAMILY RNI-like 91 413 - -
Vian5g01517 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vian5g01517 999 SMART serkin_6 709 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01517 999 FunFam Leucine-rich repeat receptor-like protein kinase 38 201 - -
Vian5g01517 999 Gene3D Phosphorylase Kinase; domain 1 675 785 - -
Vian5g01517 999 ProSiteProfiles Protein kinase domain profile. 709 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01517 999 Gene3D Ribonuclease Inhibitor 244 341 IPR032675 -
Vian5g01517 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 678 785 - -
Vian5g01517 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 786 999 - -
Vian5g01517 999 SMART LRR_typ_2 590 623 IPR003591 -
Vian5g01517 999 SMART LRR_typ_2 255 279 IPR003591 -
Vian5g01517 999 SMART LRR_typ_2 494 518 IPR003591 -
Vian5g01517 999 SMART LRR_typ_2 447 471 IPR003591 -
Vian5g01517 999 SMART LRR_typ_2 566 589 IPR003591 -
Vian5g01517 999 SMART LRR_typ_2 351 375 IPR003591 -
Vian5g01517 999 SMART LRR_typ_2 303 327 IPR003591 -
Vian5g01517 999 FunFam LRR receptor-like serine/threonine-protein kinase EFR 348 639 - -
Vian5g01517 999 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Vian5g01517 999 Pfam Protein tyrosine and serine/threonine kinase 710 982 IPR001245 GO:0004672|GO:0006468
Vian5g01517 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 246 985 - -
Vian5g01517 999 SUPERFAMILY Protein kinase-like (PK-like) 699 984 IPR011009 -
Vian5g01517 999 Gene3D Ribonuclease Inhibitor 40 156 IPR032675 -
Vian5g01517 999 SUPERFAMILY L domain-like 392 629 - -
Vian5g01517 999 Pfam Leucine Rich repeat 591 605 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01517 Vian-Chr5 37755044 37758902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01517 36 993 Receptor kinase-like Gene Family AT1G75820 60.584 0.0 1187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian5g01517 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01517 K00924 - gmx:732625 1644.79