Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01498 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCACGAAGTGGCAACACCACCATCACGACAATCACCCACCTTACTATTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAATCTTCCTCAGAGCCAGGGCTTGGTCATGGCGCGTGAACGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATTGGACACCGGATTCGGATCCTCTTTCGGTTTTTTACACAAGGAAAACGATAAGAAGAGGAAGGCGCTGAACTACAAGGTTGCTGCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGGTGAGGAAGGAGAATCCCGAGTGACAAACCAAACCAGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACATCTGCGGATTCTTCGAAGAATAATTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGGGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGGAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCCTATCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGCGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGTATCAGATATGAGTATGTGTAACAATCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATGAGCCCTTCTAATATGGGACTTCGAAGGAACATTAGTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGATGGTGATTTTCAAAGCCTTTACAACGTTGCTTGTGATCAAGGGAGAGCGGGAGCAGCATCTTTTCCTTCTCAGCCATTTACAGGTGTAGTTGAAACTAGCAATCCGAAGATGGAGATGTAA 1185 0.4549 MLHCLNGSGNLGASCSDMTVLERQREATTKWQHHHHDNHPPYYSATEFHVNLVFSSSSNNLPQSQGLVMARERDDSALSQVLAHSLKPDPGLCPELDTGFGSSFGFLHKENDKKRKALNYKVAAESDNKDKRVKVSGEEGESRVTNQTSNRNGKSNANKNNRETSADSSKNNSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREAFPSCGQGLPNIGMVSDMSMCNNPSYVQLNSTQQLVSCCGGLINNVGMSPSNMGLRRNISTTHVPLPEAFIDSSCFTQILPSSNWDGDFQSLYNVACDQGRAGAASFPSQPFTGVVETSNPKMEM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01498 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 264 IPR036638 GO:0046983
Vian5g01498 394 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 108 292 IPR024097 GO:0006355
Vian5g01498 394 CDD bHLH_AtBPE_like 184 263 - -
Vian5g01498 394 SMART finulus 200 250 IPR011598 GO:0046983
Vian5g01498 394 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Vian5g01498 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Vian5g01498 394 MobiDBLite consensus disorder prediction 140 179 - -
Vian5g01498 394 Gene3D - 191 265 IPR036638 GO:0046983
Vian5g01498 394 FunFam Basic helix-loop-helix transcription factor 191 263 - -
Vian5g01498 394 MobiDBLite consensus disorder prediction 126 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01498 Vian-Chr5 37547246 37549489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01498 5 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 37.736 1.88e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g01498 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01498 - - vun:114168601 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01498 5 37547246 37549489 Vian5g01498 5 37547246 37549489 ECH
Vian5g01498 5 37547246 37549489 Vian10g00685 10 6580056 6581517 ECH