Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01497 ATGGCTTCAAGCTCTCTCAGCAAGCAAAAGCCTTCTGATTCCTCCTGGACTCCAAAGCAGAACAAGCTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCTGATCGCTGGCAGAATGTGGCTGCAGCAGTTGGTGACAAATCCCCTGATGAAGTTAAGAAACACTATGAGATTCTCTTGGAGGATCTCAGACACATAGAGTCTGGCCATGTTCCTCTCCCCAAATACAGGTCCACCGCAACCACCACCACCAATGTTGATGATGAAGACAAGTAA 282 0.4645 MASSSLSKQKPSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAAAVGDKSPDEVKKHYEILLEDLRHIESGHVPLPKYRSTATTTTNVDDEDK 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01497 93 MobiDBLite consensus disorder prediction 1 21 - -
Vian5g01497 93 SMART sant 12 64 IPR001005 -
Vian5g01497 93 CDD SANT 15 62 IPR001005 -
Vian5g01497 93 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Vian5g01497 93 Gene3D - 7 75 - -
Vian5g01497 93 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Vian5g01497 93 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Vian5g01497 93 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Vian5g01497 93 FunFam Transcription factor SRM1 8 75 - -
Vian5g01497 93 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 88 IPR044636 GO:0003700
Vian5g01497 93 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01497 Vian-Chr5 37531088 37531369 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian5g01497 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01497 - - gmx:100785292 158.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01497 5 37531088 37531369 Vian5g01497 5 37531088 37531369 ECH
Vian5g01497 5 37531088 37531369 Vian1g01774 1 20842416 20843476 ECH
Vian5g01497 5 37531088 37531369 Vian10g00710 10 6869797 6878412 ECH