Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian5g01496 | ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATGGGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAGTCCTTGAATCGAAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGGCTTTGGATTTGTGACTTTTTCTACGGAGCAGGCCATGAGAGACGCGATCCAAGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAAGCTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGGATATGGCGGTGGTGGTGGTGGATACAATCGTGGTGGAGGAGGTGGATACGGTGGCGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGACGTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGGTTATGGCGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTCGTGGCGGTGATGGAGGGGACGGTAGCTGGAACTAG | 534 | 0.5581 | MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQSRGSGGGGGGRGGGGYGGGGGGYNRGGGGGYGGGGGYGGGGGGGYGGRREGGYSRNSGGYGGGGGYGGGRDRSYGDSGSRSRGGDGGDGSWN | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian5g01496 | 177 | Gene3D | - | 2 | 120 | IPR012677 | - | |
| Vian5g01496 | 177 | MobiDBLite | consensus disorder prediction | 81 | 177 | - | - | |
| Vian5g01496 | 177 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 86 | IPR000504 | GO:0003723 | |
| Vian5g01496 | 177 | SMART | rrm1_1 | 9 | 82 | IPR000504 | GO:0003723 | |
| Vian5g01496 | 177 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 141 | IPR035979 | GO:0003676 | |
| Vian5g01496 | 177 | PANTHER | GEO13361P1-RELATED | 4 | 161 | - | - | |
| Vian5g01496 | 177 | CDD | RRM2_NsCP33_like | 9 | 84 | - | - | |
| Vian5g01496 | 177 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 79 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian5g01496 | Vian-Chr5 | 37525075 | 37525859 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian5g01496 | 2 | 88 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 30.682 | 6.27e-06 | 43.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian5g01496 | - | K13195 | ccaj:109800369 | 159.073 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian5g01496 | 5 | 37525075 | 37525859 | Vian5g01496 | 5 | 37525075 | 37525859 | ECH |