Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01462 ATGGAGATGGAAGATTACGCGAGCAGTGATGAGGATTACCATTACGACTCCGATCAAGATGACTCCGTCGAGGCCTACGAAAACGACGAGGATTACGCGTTGCTCTCTTCCAAGGGTCCCACAACCAAGGTGATTACTAAGGAATCACTTTTGGTTGCACAGAGGGAGGATTTGCGCAGAGTAATGGAGATGCTATCGGTAAGAGAGCAACACGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTATATGTAGACAAGGGGAAAGCATTTCTCTTTGGTGAGGCTGGTGTTACTGTGGATGAACATCCCGACTCTGACTCATCCGTTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTGCTAGGGTCGAAACAACAAGAATGGATTGTGGTCATTGCTTTTGCAACTCCTGTTGGATTGAGCATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTGGTTAGAACGCTACTCAGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAGTCAGAAACTGTTAATTGGATAACCGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAAACGGCAGAACGTGCAAAGAGGGATCTATATCGGTATATGCATTATCATAACCGGTATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGTCTCTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAATTTATTTGAAGATCAACAGCAGCAGCTCGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAACCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCAACCTCTCAACAATTATTGATAAGCTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATTCATAGTATCGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCAGTTTGCTGGAACAATAAAGTAAATACTGGTGTAACAGCAGAACTTGATCGGCCTTCGGGATCAGGGAGTTCAGATGATAATGGATGCTCTTCTCGTAAACGTGCTAGAAAAGATGGTGTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1743 0.4142 MEMEDYASSDEDYHYDSDQDDSVEAYENDEDYALLSSKGPTTKVITKESLLVAQREDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVTVDEHPDSDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTGVTAELDRPSGSGSSDDNGCSSRKRARKDGVGGGFFDLNLPAEFVDRN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01462 580 Gene3D - 251 498 - -
Vian5g01462 580 MobiDBLite consensus disorder prediction 1 22 - -
Vian5g01462 580 Pfam Ariadne domain 332 580 IPR045840 -
Vian5g01462 580 FunFam RBR-type E3 ubiquitin transferase 117 207 - -
Vian5g01462 580 CDD Rcat_RBR_ARI1-like 276 329 - -
Vian5g01462 580 SUPERFAMILY RING/U-box 193 261 - -
Vian5g01462 580 ProSiteProfiles TRIAD supradomain profile. 118 332 IPR044066 -
Vian5g01462 580 CDD RING-HC_RBR_TRIAD1 120 173 - -
Vian5g01462 580 MobiDBLite consensus disorder prediction 536 558 - -
Vian5g01462 580 CDD BRcat_RBR_ANKIB1 200 264 - -
Vian5g01462 580 SMART ibrneu5 193 255 IPR002867 GO:0008270
Vian5g01462 580 SMART ibrneu5 263 328 IPR002867 GO:0008270
Vian5g01462 580 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 399 IPR031127 GO:0004842|GO:0016567
Vian5g01462 580 MobiDBLite consensus disorder prediction 536 551 - -
Vian5g01462 580 ProSiteProfiles Zinc finger RING-type profile. 122 170 IPR001841 -
Vian5g01462 580 SUPERFAMILY RING/U-box 263 320 - -
Vian5g01462 580 Pfam IBR domain, a half RING-finger domain 193 255 IPR002867 GO:0008270
Vian5g01462 580 FunFam RBR-type E3 ubiquitin transferase 251 498 - -
Vian5g01462 580 SUPERFAMILY RING/U-box 118 205 - -
Vian5g01462 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 208 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01462 Vian-Chr5 37178676 37181865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01462 62 544 ARIADNE family AT2G16090 71.458 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01462 K11968 - gmx:100783343 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01462 5 37178676 37181865 Vian5g01462 5 37178676 37181865 ECH