Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01441 ATGACGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTCTCCAAACCAAACAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGGGGTGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGGTTGAAAAAGGCAGACAACAAGTATTGGTTCCGTGACGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGCGTAGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCAGGTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATACGATGCAGTAATGAAGGGCCTCACTTTGCAAATCTTCTTAAATTTTTTGAAGAAATTGATGATGAAGATTCCATTGAAATATTGGATTCATCACCTTCCCATCTTGCTCCAAGTTCATTGCAAAATAGAGTTCTTGCTTGTTCAGTAGATAAAATGTCTCCTGCAAAGAGTTATACACCTCCAGCATTACAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTGATGCGCATTGTTCCAAAAGTGCCAATTCACTGGATGATCGATTCACCAGAGACATAGGAGTTCAATTTAACGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAACTACGTGCTTCCATGGAGGAAAGGATGAAAAAAACTGCAAGAAAGAAGCGGAAATCAGATGGACAGGAAGCCTCTGCTGAGCAAGAAGAGGAAGTTGAAATGCGCTTCAGATTTTATGAAAGTGCTTCTGCTAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCCATCAGTGCAGCGAAAGCATTTGAACCAGCTAATCCTTTCTGTAGGGTTGTCCTAAGGCCCTCCTACCTATACAGGGGATGCATAATGTATCTGCCATCCTGTTTTGCAGAAAAACATTTGAATGGAGTTTCTGGGTTTATTAAACTTCAGATTTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGTAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCGCATTACTGAGGAAGTGGGAATGTTGAAGCCTCCTCCTTCGCAGCAGAACCAAAACATGAGCTCAGCTAAACTGCTGAGCACTCCCTTGCAGCAACACCTTAGTTCAACTCAAATGGTTTGA 1287 0.4172 MTHPSFHKLLLPSTLQTKQLRLPDDFMRKYGGELSPIVTLSVPDGSVWRVGLKKADNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSGFNVHVFNLATSEINYQSAIRCSNEGPHFANLLKFFEEIDDEDSIEILDSSPSHLAPSSLQNRVLACSVDKMSPAKSYTPPALQNLFNGSKLNSINWGEGGDAHCSKSANSLDDRFTRDIGVQFNAVEFKRSTEELKLRASMEERMKKTARKKRKSDGQEASAEQEEEVEMRFRFYESASARKRTVTAEERERAISAAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRVGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFRITEEVGMLKPPPSQQNQNMSSAKLLSTPLQQHLSSTQMV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01441 428 CDD B3_DNA 4 96 IPR003340 GO:0003677
Vian5g01441 428 SMART B3_2 296 391 IPR003340 GO:0003677
Vian5g01441 428 SMART B3_2 6 98 IPR003340 GO:0003677
Vian5g01441 428 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Vian5g01441 428 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Vian5g01441 428 Gene3D - 1 98 IPR015300 -
Vian5g01441 428 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Vian5g01441 428 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Vian5g01441 428 CDD B3_DNA 294 389 IPR003340 GO:0003677
Vian5g01441 428 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Vian5g01441 428 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Vian5g01441 428 MobiDBLite consensus disorder prediction 235 254 - -
Vian5g01441 428 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
Vian5g01441 428 Gene3D - 273 393 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01441 Vian-Chr5 37029885 37032737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01441 1 392 B3 DNA Binding Superfamily AT3G18990 51.777 2.58e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian5g01441 B3 1.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01441 - - var:108340232 810.446