Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01440 ATGGCTGGTGGTGTGAAAAAATACCCTCTCTTCTTCACAATCTTCGTTCCAGAGCAACACTCTCAAACTATGAAAGTTCCAAAGGAGTTTTTGAAGAAATTGAATGAAGACTTGTCGAGTAATGAAGTTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTAAGTGTTCTAAAGAAAGGAAACGAAGTGTATATGCAAAATGGTTGGCCTAAGTTTGTGACAGATAATTCAATTGTGCTTCATGATGTACTGCTTTTTACATATCATGGAGAGAACTGTTTCCATGTTCAAATTTTTGATAAGAATGGAGTGGAGAGGTTATGCCTCAAAGAAACAACACAAGAAAAAAAAGATATGCCTTGCAGAAACAAAGGCTTTATTTTTACTGGTAGTGAGACAATGAAAACAGGGCAAAAACAAACTGCCACCCCAAGTTTGGCAAGGACAAAGAAGAAAAAAGAAAGACATTTTTCTCCTGGAAAGTCTCATCAAGAAGACTTGTCTCTTCCTAAGGACTTCCCTGCTCCTCAGCATTCAGTTGAAATTGAAAGTTCAGAAGCATTGAAATTGGCCGAGTCCTTTACCTCTAGCAAACCTTACTGGAAGCACCTCATGACAAAATGTCATGTGGAAGGTCGTTGCATATTGCCTATTGCTACTAAGTTTGCCAGAAAGTATATTCCTGAAGAAGTGAAACAGATCCATATTGGAAATTCCGAAGGAACACTTTGGAAAGTTCATGTGAGTTGGTCTAAAGGTTATGCTCACTTCAGTACAGGATGGGCAAATTTGGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAAACCTTCATTTGAGGGTTCACATATTCAGAACCAGATGTGCACCAAGTTAA 900 0.3878 MAGGVKKYPLFFTIFVPEQHSQTMKVPKEFLKKLNEDLSSNEVLSSSSSGDKWQVSVLKKGNEVYMQNGWPKFVTDNSIVLHDVLLFTYHGENCFHVQIFDKNGVERLCLKETTQEKKDMPCRNKGFIFTGSETMKTGQKQTATPSLARTKKKKERHFSPGKSHQEDLSLPKDFPAPQHSVEIESSEALKLAESFTSSKPYWKHLMTKCHVEGRCILPIATKFARKYIPEEVKQIHIGNSEGTLWKVHVSWSKGYAHFSTGWANLVRDNKLMRGDTCIFELEENLHLRVHIFRTRCAPS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01440 299 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Vian5g01440 299 SUPERFAMILY DNA-binding pseudobarrel domain 195 294 IPR015300 -
Vian5g01440 299 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vian5g01440 299 Gene3D - 4 105 IPR015300 -
Vian5g01440 299 Pfam B3 DNA binding domain 11 103 IPR003340 GO:0003677
Vian5g01440 299 Pfam B3 DNA binding domain 205 294 IPR003340 GO:0003677
Vian5g01440 299 CDD B3_DNA 206 293 IPR003340 GO:0003677
Vian5g01440 299 ProSiteProfiles B3 DNA-binding domain profile. 202 295 IPR003340 GO:0003677
Vian5g01440 299 CDD B3_DNA 9 101 IPR003340 GO:0003677
Vian5g01440 299 SMART B3_2 202 295 IPR003340 GO:0003677
Vian5g01440 299 SMART B3_2 11 103 IPR003340 GO:0003677
Vian5g01440 299 MobiDBLite consensus disorder prediction 135 171 - -
Vian5g01440 299 PANTHER B3 DOMAIN-CONTAINING 5 284 - -
Vian5g01440 299 Gene3D - 181 295 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01440 Vian-Chr5 37023156 37024521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01440 14 294 B3 DNA Binding Superfamily AT3G18990 25.150 5.95e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian5g01440 B3 4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01440 - - vra:106778427 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01440 5 37023156 37024521 Vian5g01440 5 37023156 37024521 ECH