Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01430 ATGGAAGATCATTTTTCCCCAAAGGGAAAGGAAACTGGCTATTGCACATCTCCTTGTACCCAGTTGGAGGAATCAACATCGGTTGATGGTGGGATGAAAAAATCTGCTTCAGAGGACATGTTTAGCAACTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGTTCATCTATGAATTATCAGAGTTTGGCAAGTGTGTTTTCATCATTTTCCTCAGCATCATATCCACCATCCGATGGATTGAATCTGGTGGAACAGGGCAATGGTCTATGCTTTATGACAGAAGTCAGTGAAATTCACAATGGTATAGAAAGTTCTCCTAGTTGTGAAGAAAGAGGTATATTTCAGCAAATGGACATCCAACTTGGTTTCTTAGATGAAGCAAATGATTCAAATAGCTTTGATTCAAAACAAAATCTGTTTACATCACATGTTCCTGAATGGACTTCCAATGTTGGCTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCATTGAATCATGAAATTCGTGGATCTATTGCTCTTCCTGTTTCTGATATGCATTCTCATGAGCCATGTGCTGTATTGGAACTGGTCACTACAAAGGAAAAACCTAATTTTGACAGAGAATTAGAAATTGTTACTCAGGCACTTCAGCTTGTAAATTTAAAGACTACTATGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTACGTGCGGTGTGTCACGCACATAGATTGCCACTAGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAGCTGAGAGAATACGAATCAAAGAAGGTCATACAAGTTCTGACGAAAAATGTGTGCTATGTATTGAGGAATCAGCTTGCTATATAAATGATGCAGCAATTGGAGGGTTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCAGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTACACTGATGTGAAGACATATGATATTAGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTATACCAATGATGATGATTACATATTAGAGTTCTTTCTGCCAGTGAACATGACAGGGAGTTCAGAACAACAACTTTTACTGGATAATCTCTCAGGTACCATGAGGAGAATCTGTAGGAGCTTGAGAACAGTTTCAGATACTGAAATAACAGGAATAGAAGGATCCGTAGCTGGGTTTCCAAAGGAAAAGCTCTCATATTTTTTTCCCATGTCCAAAAGGAACTCTCAGATAGCATTTATAAATGATGATTATGATTCGAATCAGAAGATGTCCTTGAAGGCATCTAACAATGGAATTGAAGCTGCTCATGGCCAGGTAATGAATGGACCAAGAAAACAGATTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTACAACAGTACTTCTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCTCGGAAGATCAATAAAGTTAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCTGGAGGATCACTGATGCAAGAAATTGACACACATAAATACATTCTGTTTCCTGAGAAAAGTGCTGTCAAAGACCCTAAGCATGCAACACAAAAGCCAGTCTCAGTAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATGATGATGATGATGGTGTTTGTTTGGTTGAAAACAAAATTGTAGACTCAAGAAGTGCACTTTTATCTAATACCAGTGAGGGAGGATTTAAAAAAGACAATGCTTCTTCTGATGATTGTTGTGAAGATTCAAAATCAGTGGCCATGAATGATGGATCAAGCCAGAAGGCCAAGAATCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACAGATGAGGCTGAAGTTGGAGTAGATGGGGGAGAAGGAATTGAAGAACATAACAACCTTATAAATTCTTCAAGCACCACAAACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAACCAACTTGTGTTGATAGTGAGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTCCAGCTATATGAAGAGGTTGCAACAAGGTTCAAACTCCAAAACGGGTTATTCAAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGAGAATGACTCAGATTTGCAAGAGTGTGTAGAAATTTTGCATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGCCTTGTGTTTTAAGCAGTTGTGGCAGCAACAATTACTTCTTGCCAGACAGCTCATAG 2598 0.3972 MEDHFSPKGKETGYCTSPCTQLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMNYQSLASVFSSFSSASYPPSDGLNLVEQGNGLCFMTEVSEIHNGIESSPSCEERGIFQQMDIQLGFLDEANDSNSFDSKQNLFTSHVPEWTSNVGYYNKTEYLRLDHALNHEIRGSIALPVSDMHSHEPCAVLELVTTKEKPNFDRELEIVTQALQLVNLKTTMPPRLLPQCLSSNKRAALTEIVDVLRAVCHAHRLPLALTWIPCCYSEGIGDEAERIRIKEGHTSSDEKCVLCIEESACYINDAAIGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDTEITGIEGSVAGFPKEKLSYFFPMSKRNSQIAFINDDYDSNQKMSLKASNNGIEAAHGQVMNGPRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSLMQEIDTHKYILFPEKSAVKDPKHATQKPVSVVSAPGSTSENSTIKLDDDDDGVCLVENKIVDSRSALLSNTSEGGFKKDNASSDDCCEDSKSVAMNDGSSQKAKNQDCPEQTCSISLVTDEAEVGVDGGEGIEEHNNLINSSSTTNSSNGSGSMMHGSSSCSQSFENQKHSKVKPTCVDSESKMIVKASYRGDTIRFKFDPSAGCFQLYEEVATRFKLQNGLFKLKYLDDEEEWVMLENDSDLQECVEILHDIGTRCVKFLVRDVPCVLSSCGSNNYFLPDSS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01430 865 MobiDBLite consensus disorder prediction 669 688 - -
Vian5g01430 865 Pfam RWP-RK domain 498 546 IPR003035 -
Vian5g01430 865 ProSiteProfiles PB1 domain profile. 765 847 IPR000270 GO:0005515
Vian5g01430 865 SUPERFAMILY CAD & PB1 domains 760 849 - -
Vian5g01430 865 MobiDBLite consensus disorder prediction 653 688 - -
Vian5g01430 865 Gene3D - 761 844 - -
Vian5g01430 865 PANTHER PROTEIN NLP8 145 857 IPR045012 GO:0003700
Vian5g01430 865 MobiDBLite consensus disorder prediction 717 749 - -
Vian5g01430 865 Pfam PB1 domain 768 846 IPR000270 GO:0005515
Vian5g01430 865 SMART PB1_new 765 847 IPR000270 GO:0005515
Vian5g01430 865 MobiDBLite consensus disorder prediction 604 627 - -
Vian5g01430 865 MobiDBLite consensus disorder prediction 714 749 - -
Vian5g01430 865 ProSiteProfiles RWP-RK domain profile. 478 566 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01430 Vian-Chr5 36937610 36943874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01430 119 861 NLP Transcription Factor Family AT2G43500 51.989 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian5g01430 PB1 1.8e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01430 - - gmx:100793770 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00277 11 2609337 2614391 Vian5g01430 5 36937610 36943874 PCT