Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01423 ATGACGGTGGACGATCGGTTCGCACATTTGAACCCTAAGACGTGCGTAGTTGTAGGTGGCAGAGGATTCCTCGGAAGATCATTGGTCCTCAGGTTGTTGAAACTCGGTAACTGGATCGTCCGAATCGCCGATTCCGCTCACTCTCTCCAGTTCCATCACTCCGAGTCCATCCTCGCGCAAGCTCTCTCTTCCGCACGCGCTTCTTACTTCCACATCGACCTTACCGATAAATGCAACATTGTCAAAGGTCCACAATCCTTTCTGTTACGTCACGTGTTTGTGCATCACACTCTTCTAGGAGGTTCTTCTGTTGTGTTTTTTATGGATGTTGCTGGCGTTGATGTTAATGACTTCTATACTTGTTACAGGCTAATAGTTCAAGGAGCCAAGAATGTAATTAGTGCTTGCCGAGAATGTAGAGTGAAACGCCTAATATATAACAGTTCCGCGGATGTTGTATTTGATGGTTTGCATGATATTCGTGATGGAGATGAGTCGTTGGCCTATCCGTGGAAAACTGACAATATGTTGAGTGACCTTAAGGCTCAAGCGGAATCTTTGATCCTGAGTGTCAATGACATTGATGGCCTATTGACGTGCTCTCTTCGTCCTAGTAATGTTTTTGGACCTGGTGACACAGAATTTGTACCATATTTTCTCAAGTCAGCAAGATATGGTTTTACAAAGTTTATTATAGGGACTGGTGATAATCTTTCAGATTTCACCTTTTCTGAAAATGTTACCCATGCCCACATCTGTGCCGAAGAAGCCCTAAATTTCCAAACAGTTTCTGTTGCAGGAAAGGCATTTTTCATCACGAATAATGAGCCAATAGAATTCTGGGAATTTCTTTCGCTTTTGTTAGAAGGTCTTGGATATCGAAGGCCATATGTCAAACTTCCGGCTAAGTTGGCTCAATATATTCTATCAGTTTTAAAGTGGTCACATGAAAAGTTGGGATCCAGATACTTCAGCTATCCTTTATTAGTTCACTTTTTTCAGTTAGCTTCATACACCCGAACTTTCAACTGCACGAAAGCTCACAAACATATTGGATACTCACCAATAGTCTCCCTCGAGGGTGTGCTTGGCTCCAATGAAATTTTCTTTGCACTTGTATGGTACAAGTTAAAAGTGGCAGTGTTCTCAGAGAAGTGCAGAATTGGAACTTTTATATCATCTGCTGCAAAACTTTTGCTGCTTGCTACGTTACTTTTTTACGGACATGGTTTTCTGCCGTCAAAGTTGTTTGGTTTTAATATACAAAGGATACCCTTGTCTTGTTTTGAGATCTCTGATGCGGTAGTGAAAGATTCAGTTATAACCACAGTGTATCTCTGGAATAAGGGTTTTCAAATAATAAGAAGATTGGCCCATGGGGAAGACTGGTCTGCATTCTTCAAGATTGCAGTTTTTCTTTACCTTATGAAGATCTTCTTGTCAAAGTTGTTGACAAAATTGATAGGCATAGGTTTGGTGTTCGCATTTATGGGATTTTTTGTGTACGAGCAATATGAATCCGAAATTGATGGAATGGTTGATGTTCTTTTCACCAGTTTGAAAGAGTTCATGATATATTTGATGAGAATTTCTCCTGTTTTTAAATCGAGGCTTCTGCGTTATCATGACAACTTTCAGCGATTGCAATATGAAAAAGAAAATGTAAATGCTGATATTCTTTGGTTTCTCTCAAACACATCTTCTTTCTACTTGTTTCTTGCATTTGAATTGAAGCTATTGGTTCCAATGCCACTTCCAGCAAAACCAATGAGGGACTCCGACGAGTTGGCGAGCCCGTCGAACAACCTGTGGGTGGGGAATCTGGCGCCGGACGTCACTGACGCCGATCTCATGGAACTTTTCGCCAAATACGGTGCGCTCGACAGCGTAACTACTTATTCCGCTCGCAGTTACGCCTTCATCTACTTCAAGCGCGTCGAGGACGCCAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCTAAGGCATGCAAACAGCTTTGGGTGGGGGGTATTAGCCCCGCTGTTACAAAGGAAGAATTGGAGGCTGAATTTCGTAAAATTGGTACAATTGAGGATTTTAAGTTCTACAGAGACCGAAATTCTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTCCCAGGCCATGAAAATAATGAATGGGAAGCGAATAGGTGGGGAGCATATTCGTGTTGACTTCCTTCGAACCCAATCGATAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGACAGAAAAGACCTCTGCATTCACAGGCTCCAATGGGGAGGAAAGGCGATGCTCAACCAAGTAATGTTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATGAACAAATGCTGCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAATTATTCTATCGTAGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCCAGCAATGACCTAGTACATGGAAGTGATTATCCTGGCTTTTTTGCTGGAAGTAATGGACCGAGGCCTGATGTATTGCTGAATGAGAATCCATTCCGACAGTTACAAATGGATGCATTTGGTCATAATCGTCCAGTGGTTCCAAATAATTTTACTGGTCAATTACCACCTAGTGGTATTATGGGTCCAAATGTACCATTGCGACCTTTTGGTCCACTTAGCAATGTTGATTCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAGTGCCCTCCACAAAATTCAAGATGGCAGCTCCAAGAGTAACATGGCTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGTTGCTAGGCATCCTACAAGATCCACCACCGGTGCATGGGATGTACTTGACATAAACCATATTCCTAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTACCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATAGATGATCGTGGGTTAGCCCTGGAGCAATCTTATGGGATAGATCCATCAATGGATAGAGGTGGTTCTGGTCCGTTTGCAAACATTCAAGGAAAAAATCACCTTGGTCCAATGAGCTCAAGGATTACAGCTGGAGTACATGGTATGGTCCAACCTGATAATGATCATATTTGGCGTGGAATCATTGCAAAAGGTGGAACTCGTGTTTGTAAGGCTAGATGTGTACCAATTGGGAAAGGGATTGGGACTGAGCTTCCTGATGTCATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCATCATATACTGAATTCCTTCGATATCTCAGTGCAAATAATCGTGCTGGTGTTGCCAAATTTGGTGATAACACCACATTATTCTTGGTGCCTCCTTCTGATTTTCTCACTAGAGTTTTGAAAGTCAGTGGACCCGAGCGACTATATGGTGTCTTTCTGAAGTTTCCTCAAGTGCCAAGTAGTGCACCTATGCAGCAAGCATCGAACTTGCCTGTACCGACAAGTCAGTTTATGCAGCAAATTCCTCTTTCACAGACTGAATATGGTTTGATTCCTATTAAAGAGGAACAGGTTGTGTCAATGGATTATAACAGACAATTGCGTGAGGATTCTAAGCTTCCTAGTAAACCAGCCTACCTGCCTACAGGAGGGCCTCCTTTAGTTCATTCTGTACCTTCAGATTATGCTCCTAATAATGCTATTGCTGGGTCCCAAGCAGGAGTTGCATTAACTCCTGAGCTGATTGCAACTTTAGCATCTTTTCTCCCTTCAACTACACCATCATCTGCCATTGATGGTGCCAAGCCTGGAGTAGGTTCCTCAACCATGAAGCATCCTTTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAAGACAATCAAAGTGCTGATCAAACCACTCATCCTCCTCAACAGATGAGGAGTATGTATAGCGTTCACAATGCTCACTATCAGCCATATCCACCAGCATCTGCTCCAGCTGGCAATCATGCTCAAGTGGTCTCTAGCAGTTCTCACATCCAAGACACTGCAGCCACCATGCATCAGCAAGGTGCTGTTTCATCTAGACACATGCCTAATTTCATGATGCCCGGTCAAAGTGGACAGGTAGCTGCATCTCCTCATGGCAGTCAGCATTATCAAGTTAAAGTCTCCCCAAGCAATCAGAAAGGCTTTGGAGTTGTGCAGGGAACGGATGCCCCTGTGTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATCCACTGTCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCTAATTCTTCACAACAGCTGACTGCCGTGCCATACACAGTAGACCAAGTAAACTCGGACACCACAAATCAGCAACTTTCTGCTTCTGGAGTCGGTCAAGGCACACCAGAGGTGGAGGCTGATAAGAACCAGAGATATCAGTCAACATTGCAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCGGCAGGAGGTCATGGACCAGGAATTCAACAATGA 4749 0.4304 MTVDDRFAHLNPKTCVVVGGRGFLGRSLVLRLLKLGNWIVRIADSAHSLQFHHSESILAQALSSARASYFHIDLTDKCNIVKGPQSFLLRHVFVHHTLLGGSSVVFFMDVAGVDVNDFYTCYRLIVQGAKNVISACRECRVKRLIYNSSADVVFDGLHDIRDGDESLAYPWKTDNMLSDLKAQAESLILSVNDIDGLLTCSLRPSNVFGPGDTEFVPYFLKSARYGFTKFIIGTGDNLSDFTFSENVTHAHICAEEALNFQTVSVAGKAFFITNNEPIEFWEFLSLLLEGLGYRRPYVKLPAKLAQYILSVLKWSHEKLGSRYFSYPLLVHFFQLASYTRTFNCTKAHKHIGYSPIVSLEGVLGSNEIFFALVWYKLKVAVFSEKCRIGTFISSAAKLLLLATLLFYGHGFLPSKLFGFNIQRIPLSCFEISDAVVKDSVITTVYLWNKGFQIIRRLAHGEDWSAFFKIAVFLYLMKIFLSKLLTKLIGIGLVFAFMGFFVYEQYESEIDGMVDVLFTSLKEFMIYLMRISPVFKSRLLRYHDNFQRLQYEKENVNADILWFLSNTSSFYLFLAFELKLLVPMPLPAKPMRDSDELASPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTTYSARSYAFIYFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISPAVTKEELEAEFRKIGTIEDFKFYRDRNSACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRTQSIKRDQLLDYGQFQGKSLGPSDAYSGQKRPLHSQAPMGRKGDAQPSNVLWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPGFFAGSNGPRPDVLLNENPFRQLQMDAFGHNRPVVPNNFTGQLPPSGIMGPNVPLRPFGPLSNVDSVISGPEFNEISALHKIQDGSSKSNMAPNWKRPSPPAPGMLSSPAPVARHPTRSTTGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNIDDRGLALEQSYGIDPSMDRGGSGPFANIQGKNHLGPMSSRITAGVHGMVQPDNDHIWRGIIAKGGTRVCKARCVPIGKGIGTELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSANNRAGVAKFGDNTTLFLVPPSDFLTRVLKVSGPERLYGVFLKFPQVPSSAPMQQASNLPVPTSQFMQQIPLSQTEYGLIPIKEEQVVSMDYNRQLREDSKLPSKPAYLPTGGPPLVHSVPSDYAPNNAIAGSQAGVALTPELIATLASFLPSTTPSSAIDGAKPGVGSSTMKHPFPPVAPNDGSQSYLWKQDNQSADQTTHPPQQMRSMYSVHNAHYQPYPPASAPAGNHAQVVSSSSHIQDTAATMHQQGAVSSRHMPNFMMPGQSGQVAASPHGSQHYQVKVSPSNQKGFGVVQGTDAPVLYNSQAFQQPNNNPLSFQQPNNSIALTNQVSGANSSQQLTAVPYTVDQVNSDTTNQQLSASGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAAGGHGPGIQQ 1582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01423 1582 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 362 IPR036291 -
Vian5g01423 1582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 601 673 IPR000504 GO:0003723
Vian5g01423 1582 Pfam Reticulon 390 514 IPR003388 -
Vian5g01423 1582 FunFam flowering time control protein FPA 791 886 - -
Vian5g01423 1582 MobiDBLite consensus disorder prediction 965 998 - -
Vian5g01423 1582 CDD RRM_SF 680 746 - -
Vian5g01423 1582 Gene3D - 788 880 IPR012677 -
Vian5g01423 1582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 798 871 IPR000504 GO:0003723
Vian5g01423 1582 FunFam Flowering time control protein FPA 593 675 - -
Vian5g01423 1582 MobiDBLite consensus disorder prediction 1352 1375 - -
Vian5g01423 1582 Pfam SPOC domain 1088 1205 IPR012921 -
Vian5g01423 1582 FunFam Flowering time control protein FPA isoform A 676 790 - -
Vian5g01423 1582 MobiDBLite consensus disorder prediction 769 792 - -
Vian5g01423 1582 Gene3D - 5 369 - -
Vian5g01423 1582 PANTHER RNA RECOGNITION MOTIF-CONTAINING 577 671 - -
Vian5g01423 1582 SMART rrm1_1 679 746 IPR000504 GO:0003723
Vian5g01423 1582 SMART rrm1_1 602 669 IPR000504 GO:0003723
Vian5g01423 1582 SMART rrm1_1 799 867 IPR000504 GO:0003723
Vian5g01423 1582 SUPERFAMILY RNA-binding domain, RBD 679 868 IPR035979 GO:0003676
Vian5g01423 1582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 678 750 IPR000504 GO:0003723
Vian5g01423 1582 CDD SPOC_FPA-like 1093 1213 - -
Vian5g01423 1582 CDD RRM_SF 603 669 - -
Vian5g01423 1582 MobiDBLite consensus disorder prediction 1355 1375 - -
Vian5g01423 1582 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 16 301 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vian5g01423 1582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 603 666 IPR000504 GO:0003723
Vian5g01423 1582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 810 864 IPR000504 GO:0003723
Vian5g01423 1582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 680 743 IPR000504 GO:0003723
Vian5g01423 1582 Gene3D - 676 756 IPR012677 -
Vian5g01423 1582 Gene3D - 587 675 IPR012677 -
Vian5g01423 1582 SUPERFAMILY RNA-binding domain, RBD 581 674 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01423 Vian-Chr5 36858003 36871411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01423 14 358 Lipid Metabolism Gene Families AT2G33630 27.493 8.56e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01423 - - gmx:100777570 1739.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00287 11 2718192 2722182 Vian5g01423 5 36858003 36871411 PCT