Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01421 ATGGAAAGAGACAAAGACAACAAATCCCCTCCTCTGCCACCTTCGTCTTCCTCATCCCAACCTTTCAGCCATGACATCGTCGGAATGCCCGATAATCCAATCAAAAACAGGGGCCATAGACGCGCCCATTCCGAGATTATCACCCTTCCCGATGACCTCACCTTCGACACTGATCTCCCCCTCGATGACGACTTCCTCGCCCTCGTGGATCATTTTAACTCCCCTCCGTTGCCTGAAGATGACAACAAAATCATCGTCAACAACAACGATTACAGCAGCAACAATCACGATAACAACGTTGGTAACGAAAGGCCGAGGGTTAGACACCAGCATAGCCATTCCATGGATTTGTCCATCCAGCCGGAGATGCTGGTCTCCGGTGCCGATGACGTGTCCGGCGTGGATACCAAAAGGGCTATGTCGACTGACAAGCTTGCTGAGCTTGCCTTAATTGATCCCAAGCGGGCTAAAAGGATATGGGCAAACCGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGACGCAACATCCTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAACGGACTGAATGCTGAGAACGGTGAGTTGAAGTTGCGGTTGCAAACGATGGAGCAACAGGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAATTAATGACTGGACAAGCCATTTCAAATGGAGGACACTTTGCTTCATTTGGTGGTGGGCAACAATTCTATCCCAATAATCACGCCATGTACACTCTTTTGGCTGCACAAAAGTTTCAACAACTTCAAATTCAATCCCAGAAGCAGCAGCAGCAGCATCAACTTCAGCAGCAGCAACAACAATTTCAGCAACAACAACAACTTCAGCATCAACTACATCAGCAACAACAGCAACAACAAACAACACCAACAGGTACTGTAACATCAACAAATGTGGTGCTTGAATAA 1017 0.4592 MERDKDNKSPPLPPSSSSSQPFSHDIVGMPDNPIKNRGHRRAHSEIITLPDDLTFDTDLPLDDDFLALVDHFNSPPLPEDDNKIIVNNNDYSSNNHDNNVGNERPRVRHQHSHSMDLSIQPEMLVSGADDVSGVDTKRAMSTDKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTDATSLSAQLTLLQRDTNGLNAENGELKLRLQTMEQQVHLQDALNDALKEEIQHLKLMTGQAISNGGHFASFGGGQQFYPNNHAMYTLLAAQKFQQLQIQSQKQQQQHQLQQQQQQFQQQQQLQHQLHQQQQQQQTTPTGTVTSTNVVLE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01421 338 MobiDBLite consensus disorder prediction 319 338 - -
Vian5g01421 338 Coils Coil 205 239 - -
Vian5g01421 338 FunFam probable transcription factor PosF21 153 206 - -
Vian5g01421 338 Coils Coil 170 197 - -
Vian5g01421 338 Gene3D - 153 206 - -
Vian5g01421 338 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 325 - -
Vian5g01421 338 SMART brlzneu 150 214 IPR004827 GO:0003700|GO:0006355
Vian5g01421 338 Coils Coil 282 318 - -
Vian5g01421 338 Pfam bZIP transcription factor 154 208 IPR004827 GO:0003700|GO:0006355
Vian5g01421 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 152 215 IPR004827 GO:0003700|GO:0006355
Vian5g01421 338 SUPERFAMILY Leucine zipper domain 154 205 IPR046347 GO:0003700|GO:0006355
Vian5g01421 338 CDD bZIP_plant_RF2 155 204 IPR044759 GO:0003700|GO:0006355
Vian5g01421 338 MobiDBLite consensus disorder prediction 1 40 - -
Vian5g01421 338 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01421 Vian-Chr5 36840099 36844283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01421 10 279 bZIP Transcription Factor Family AT1G06070 63.366 7.18e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian5g01421 bZIP_1 1.9e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01421 - - vun:114169967 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00288 11 2729368 2732167 Vian5g01421 5 36840099 36844283 PCT