Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01416 ATGGAGTTTGAGATTGATGGTACTGGCGAGACAGTAGCAAATGCTGCTATAGATGAGATTAGTAGCGTGGCTGATGACAACAGAGAAGGTGAATCTATCGAACCAAATTACAAACAAGATGAAGGTGATAATCTTGCTCAAGATTCCTCTGGGATCACAATCCCATTTGCAATTCCCACAGTATCAGTTGTTGCAGTTGAAGAGCCGTATGTGGGTCAGGAATTTGAGTCAGAATCAGCAGCACAGGCATTTTACAATGCATATGCCACAGATGTTGGATTCATCGTGCGTGTGAGTAAACTGTCGCGATCAAGGCGTGATGGAACTGCCATTGGACGTGCTCTTGTTTGCAACAAAGAAGGTTTCAGAATGCCTGACAAGCGTGAGAAGATTGTGAGGCAAAGGGCTGAGACCAGGGTCGGTTGCCGGGCAATGATTATGGTGAGGAAAGTTAGTTCTGGCAAATGGGTTGTTACAAAGCTTGTAAAGGAACATACACATCCTTTGACTCCTGGTAAAGGAAGAAGGGATTTCGTTTATGAACAATATCCGAATGAACATGACAAAATTCGGGAACTATCTCAGCAGTTGGCATGTGAGAAAAAGCGATCTGCAACCTATAAAAGACATCTTGAACTGATATTTGAGCACATTGAAGAGCATAACGAGAGTCTTTCAAAGAAAATACAGCACATAGTAGACAGTGTGAGGGAGATGGAAACCAAAGAACAACAGAGTCAACTCTAA 747 0.4284 MEFEIDGTGETVANAAIDEISSVADDNREGESIEPNYKQDEGDNLAQDSSGITIPFAIPTVSVVAVEEPYVGQEFESESAAQAFYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTPGKGRRDFVYEQYPNEHDKIRELSQQLACEKKRSATYKRHLELIFEHIEEHNESLSKKIQHIVDSVREMETKEQQSQL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01416 248 MobiDBLite consensus disorder prediction 16 49 - -
Vian5g01416 248 Pfam FAR1 DNA-binding domain 84 170 IPR004330 -
Vian5g01416 248 MobiDBLite consensus disorder prediction 22 38 - -
Vian5g01416 248 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01416 Vian-Chr5 36811934 36814173 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian5g01416 FAR1 1.7e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01416 - - var:108338935 482.641