Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01413 ATGGGGATCTCGCTAAAGCGTCAGTTGTTGAACGAGAATCCATGTTCATTTAGGCTTCTGTTTGAGCTGGTGGTTTTATCGTACTTGTGGTTACAAGTAACAAGCCTTGGTTCCATGTCATCCATTGCCATCTCGTACGGCGAAAAGGGTTCTGTGTTTTGTGGTTTGAAATCTGATGGCTCTCACACAGTGACATGTTATGGAGGCAATTCAGCCATAATCTATGGAACACCAGCCCAGTTTTCATTTGTTGGTCTAACAGCTGGAGACGGCTTTGTCTGTGGGCTTCTGATGGGTTCCAATCAACCGTACTGCTGGGGTAGCAGTGCTTACATTGAAATGGGAGTGCCACAACCTATTATCGGAGGAGCACAGTACCTAGAAATCAGTGCTGGTGATTACCATGTTTGTGGCTTGAGGAAACCTTTGACTGGAAAACACAGGTACATTTCCTTGGTTGATTGCTGGGGCTACAACATGACCAAAAACTATGTGTTTGGGGGACAGATTGAATCAATCACAGCTGGTTCCGAATTCAATTGTGGTCTTTTTTCTCAGAACAGGACTGTGTTCTGCTGGGGTGATGAGACTAATAGCCTGGTGATTAGTTTGATTCCACAAGACAAGAGATTCCAGAAAATTTCAGCCGGTGGGTATCATGTGTGTGGAATCTTAGAGGGAGTGAATTCCAGGACTGTTTGTTGGGGGAGAAGCTTGAACCTTGGGGAAGAAATTTCTGTGGCACATGCAGGTCAAGGAAACGTTGATTTGGCTCCAAATGATCCCATGCTTTCTGTAGTGGGAGGGAAGTTCCATGCATGTGGGATTAAGAGCTATGATCGTGGAGTGATTTGTTGGGGCTTTATCATCAAACGAAGCACTCCATCTCCTAGAGGGATTAAGGTTTTTGAAGTTGCAGCCGGTGATTACTTTACTTGTGCAGTTCTTGCTGACAAATATCTTATGCCTTCATGTTGGGGAGTTGATTTTCCCACCTCACTTCCTTTAGCTGTTTCACCAGGAATGTGTCAACCTGCTCCATGCCCTCCTGGTTCATATGCCATTAATCAGCATAAAGGTCTCTGCAAATCACCAGATTCTCGTGTTTGCATGAGATGCAGCGGTGCTTGTCCTCCTGAAATGTATCAGAAGAGTGCATGCAATTTGGCTTCTGATAGACTGTGTGAATATAACTGTGCCTCTTGTTCTTCATCCCAATGCTTCACGAACTGCTCCTCTTCATACTCCAATGCTTCCACTGAGAAGAAAACTGAAAAATTCTGGGCTTTACAGTTGCCAGTTGTAATTGCCGAGATTGCTTTCGCGGTTTTCATAGTCAGTGTGGTGTCAATAACTGCAATTTTATACGTCCGCTACAGGCTAAGAGATTGTGAGTGTTCAAAAGGGTCAAAGGGGAAGAAACTCAACGGGAGTTCATCCCTGCAAAACGAGAATAAGGTGAGGCCAGACAATGAGGAGTTAAAGATCAGAAGGGCTCAAATGTTCACCTATGAGGAACTAGAAAGTGCAACTTGTGGATTCAAGGAAGAGTCCATAGTGGGGAAGGGGAGTTTCTCTTGTGTGTTCAAGGGAGTGCTGAAAGATGGGACAGTTGTTGCTGTCAAAAGGGCAATAGTGTCTCCCAACATGCAGAAGAATTCCAAGGAGTTTCACACTGAACTTGACTTGCTCTCAAGGTTGAACCACGCTCATTTGCTCAACCTACTAGGCTATTGTGAAGAAGGTGGAGAGAGACTTCTTGTGTACGAGTTCATGGCTCATGGCTCCTTGCACCAACACTTGCATGGGATAAACCAAGTGTTGAGAGAACAGTTAAATTGGATAAGAAGAGTGACTATTGCAGTGCAAGCAGCACGTGGAATTGAATATTTGCATGGCTATGCTTGCCCTCCTGTGATTCACAGAGACATAAAGTCCTCAAACATTCTGATTGATGAAGAACACAATGCAAGAGTGGCTGACTTTGGTTTATCATTGTTAGGTCCTGCAGATAGTGGTTCACCACTGGCTGAACTCCCAGCTGGGACTTTTGGCTATCTTGATCCTGAATACTACAGGCTTCATTACCTCACAACCAAATCAGATGTGTATAGTTTTGGTGTTCTTCTTTTGGAGATTCTGAGTGGTAGAAAAGCCATTGACATGCAATATGAAGAAGGGAACATAGTGGAATGGGCAGTGCCTCTTATAAAATCAGGAGATATAGCTGAAATTTTGGACCCAGTTTTGAAACCCCCTCCTGATGTAGAAGCCTTGAAGAGAATAGCCAATGTGGCTTGTAAGTGTGTGAGGATGAGAGGGAAAGAGAGACCCTCAATGGACAAAGTGACAACAGCTTTGGAGAGAGGTCTTGCACAGTTGATGGGTAGTCCATGCATTGAGCAGCCTATTTTGCCAACTGAGGTGGTTTTGGGAAGCAACAGATTGCACAAGAAATCATCTCAAATATCCTCAAACAGGTCAGTTTCTGAGACTGATGTGGTAGAACATGAGGACCAAAGGATCGAGTTCAGAGCACCCTCATGGATTACCTTCCCCAGTGTGACATCTTCTCAGAGGAGAAAGTCATCAGTGTCTGAGGTAGATGTTGATGGGAAGAATAATGCAGAAGGTAAGAACTTGAGCAATGTTGGAGGTGGTGGTGATAGCAGTCAACAATGCATTAGTAGGTTTTCCCCCAAAAATAGGAGTGGGATCTTAGTGAACTTTTGA 2733 0.4438 MGISLKRQLLNENPCSFRLLFELVVLSYLWLQVTSLGSMSSIAISYGEKGSVFCGLKSDGSHTVTCYGGNSAIIYGTPAQFSFVGLTAGDGFVCGLLMGSNQPYCWGSSAYIEMGVPQPIIGGAQYLEISAGDYHVCGLRKPLTGKHRYISLVDCWGYNMTKNYVFGGQIESITAGSEFNCGLFSQNRTVFCWGDETNSLVISLIPQDKRFQKISAGGYHVCGILEGVNSRTVCWGRSLNLGEEISVAHAGQGNVDLAPNDPMLSVVGGKFHACGIKSYDRGVICWGFIIKRSTPSPRGIKVFEVAAGDYFTCAVLADKYLMPSCWGVDFPTSLPLAVSPGMCQPAPCPPGSYAINQHKGLCKSPDSRVCMRCSGACPPEMYQKSACNLASDRLCEYNCASCSSSQCFTNCSSSYSNASTEKKTEKFWALQLPVVIAEIAFAVFIVSVVSITAILYVRYRLRDCECSKGSKGKKLNGSSSLQNENKVRPDNEELKIRRAQMFTYEELESATCGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGINQVLREQLNWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSGSPLAELPAGTFGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDIAEILDPVLKPPPDVEALKRIANVACKCVRMRGKERPSMDKVTTALERGLAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQISSNRSVSETDVVEHEDQRIEFRAPSWITFPSVTSSQRRKSSVSEVDVDGKNNAEGKNLSNVGGGGDSSQQCISRFSPKNRSGILVNF 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01413 910 Gene3D - 77 341 IPR009091 -
Vian5g01413 910 MobiDBLite consensus disorder prediction 467 487 - -
Vian5g01413 910 FunFam Receptor protein kinase CRINKLY4 592 794 - -
Vian5g01413 910 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 347 395 IPR001368 GO:0005515
Vian5g01413 910 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 21 901 - -
Vian5g01413 910 FunFam Serine/threonine-protein kinase-like protein CR4 35 202 - -
Vian5g01413 910 Gene3D Phosphorylase Kinase; domain 1 484 591 - -
Vian5g01413 910 ProSiteProfiles Protein kinase domain profile. 514 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01413 910 SUPERFAMILY RCC1/BLIP-II 34 288 IPR009091 -
Vian5g01413 910 MobiDBLite consensus disorder prediction 876 897 - -
Vian5g01413 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Vian5g01413 910 FunFam serine/threonine-protein kinase-like protein CCR1 484 591 - -
Vian5g01413 910 Gene3D Transferase(Phosphotransferase) domain 1 592 795 - -
Vian5g01413 910 ProSitePatterns Protein kinases ATP-binding region signature. 520 542 IPR017441 GO:0005524
Vian5g01413 910 SMART serkin_6 514 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01413 910 SUPERFAMILY Protein kinase-like (PK-like) 494 787 IPR011009 -
Vian5g01413 910 MobiDBLite consensus disorder prediction 860 897 - -
Vian5g01413 910 Pfam Protein tyrosine and serine/threonine kinase 517 786 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01413 Vian-Chr5 36784530 36789897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01413 19 880 Receptor kinase-like Gene Family AT3G59420 68.700 0.0 1213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vian5g01413 PK_Tyr_Ser-Thr 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01413 - - gmx:100797455 1654.03