Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01408 ATGTATCCAAAACGGTCAGGCCAAGATGGCCCTGATTTGAGACAAGTGCGCTCAAGTGACAGGATCAAGACAAGGCCAAACATTTATGGCCGACCATACTTGTTTTATAACCAAAATCTTAGGCGCACAAGGAAAAACAAGAACAAGACAAGGACTGCAGCTTCTCAGATTGCCAAAATGTTGCGTCCAGGGAATCGGAAACCACAAGATTCTAATGCTAATTCTGGCTCTGCCAACCTTCGCCGTTCAACAAGGAAGAGAAGGATTAATGTAAATCTTGAAGATTTTACAGATAGCTCTGGAGCTGAAGACGAAGACTTAATGAGACCTGCATATCCCTCATTGAGAAACCAGATTAAAAATAGAGTCAAACGGGATGGTTTGATGTCTTCTAAGCGCAAAAGAGCAGACAATACTAAGCCAGCACCTCGACGTGAAGGCTTACGTCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTGATTTCAGAGTCAGATGATGAGCAAGACCTGTCAGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGCTGAGGAAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGCAGAGGGTGAAGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGGAATCGTTCAGATGTTCGGAGGTTCTCTATGGAGGAAAGAAAGGCTCGGCCTAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGTACCAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCAAGGCCTGAAGATTCTGATGACTCACTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTTCATGGGGGCGAGGTGGTAACAGATCTGGTCCACCTTGGCTTTTTGGAGGCTTAGACATGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTTACATCTGGGATTCAAACTGCTGGACCAAGCTCCAAGGGTGGAGCAGATATCCAACCCTTACAGGTTGACGATAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTACTATATCCGGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGAGTGTTGTTGTGTGGCCCCCCTGGCACAGGGAAAACATTGATTGCAAGGGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTGAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAGATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAGGAACAAATTCACAATTCAATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGCGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGATCGAGAGTTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAACATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCCAGTTGTGTAGGTTACTGTGGTGCTGATCTGAAAGCTCTTTGTACTGAAGCTGCCATCCATGCATTTCGGCAAAAGTATCCACAAGTTTATACAAGTGATGACAAATTTGTTATAGATGTTGATTCTGTCAATGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACTATTACTCCTGCTGCTCATAGAGGAGCCATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTCCAGCGACATTTAGAGAAAGCCATGAGTGTTATATCTGATATTTTCCCCGCAGCTTCTATTGCATCTGAGTTGACTAAACTTTCAATGCTGTCCTACGGGTCTGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAGTTTCCTGTGCATTCATTAGGACTCCCATCTCTTCTGTCAGATCCCAGTGCAAAGACACCAGAAGAGGCATTAGTACATATATTTAGTGAAGCTAGAAGAACAACACCATCAATTCTTTATTTACCACAGTTTGATGTTTGGTGGGAAACTTCTCATGAGCAGCTCAGGGCTGTTCTCCTGACTTTGCTGGAAGAATTACCATCTGACCTGCCTATCTTACTGCTTGGTACATCCTCTGTTGAACCTGCTGAAGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCACAATTTATCAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTAATAGAAGCTGTTATGTCAATATTGTTGGAGGGAATCAACAAGAAGTCACAAGATACGGGATACCTCCCTGAACTTCCTAAGGCACCAAAATTGGCTACTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGCAGGTTACGAATGTGCCTTAGAGATATTTGCAACCGGATACTGTATGACAAAAGATTTAATGCCTTCCATTATCCAGTGTCAGACGAAGATGCACCAAATTACCGGTCAATTATACAGAACCCAATAGACATGGCTACCATCCTGCAGCATGTTGATAATGGCCAATATATTACATGTACTGCATTCATGCAGGATATCAATCTTATTGTATCCAATGCAAAGGCCTACAATGGAGAGGATTACAACGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTGCGTGATGCGGTGCATGGAATGCTCTCACAAATGGATCCAGCACTGGTTGCTTATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAACTGTCTGATGAATTAGAGGATTCAACATTCCCTGCTTCTCCTGTTGTGCAGCTGGGTACTGGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACGTGGATCAGAGTTATGAGGCATTGAAGCGAGCTAAGAAGATCACCGAAGTGCATGCAGAAGACAAGTCGCAAGATTCTGTTCCGCCAAAGTCTTCCCGGGAGCATCAACCTAATGACACTAATGCTAAAGGGCTTGAACCTATGTCAATTGAAGAAAACTTGCATGGAACTTGTACACACAACCTTGCTGATGGCAACAGTCCCCAGGATGTCACAGTGCTAGATGATGAATTTTTGAGAAAAGTGGAATCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAGTTTCAGCATTCCACAACTTGAAAGGCTTTACACAAGAATTATGAAGGGTGTGTTTGAAACAAAAAATAAAGGAGTGAATGGGGATCTTAAGGCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3585 0.4371 MYPKRSGQDGPDLRQVRSSDRIKTRPNIYGRPYLFYNQNLRRTRKNKNKTRTAASQIAKMLRPGNRKPQDSNANSGSANLRRSTRKRRINVNLEDFTDSSGAEDEDLMRPAYPSLRNQIKNRVKRDGLMSSKRKRADNTKPAPRREGLRPRRSKGAVIERLISESDDEQDLSEEKVDQDETENGNDAEENDADDGQNEIEGDAEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAISWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVNVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSVISDIFPAASIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPQFDVWWETSHEQLRAVLLTLLEELPSDLPILLLGTSSVEPAEVEEVPTSVFPHRTIYQVNMPCAKDRTLFFNLLIEAVMSILLEGINKKSQDTGYLPELPKAPKLATGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPIDMATILQHVDNGQYITCTAFMQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELEDSTFPASPVVQLGTGTRMSARLRHVQPEVNVDQSYEALKRAKKITEVHAEDKSQDSVPPKSSREHQPNDTNAKGLEPMSIEENLHGTCTHNLADGNSPQDVTVLDDEFLRKVESVKQLFVKRSESFSIPQLERLYTRIMKGVFETKNKGVNGDLKASVLKFLLNFVEDDANF 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01408 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 637 IPR027417 -
Vian5g01408 1194 MobiDBLite consensus disorder prediction 166 219 - -
Vian5g01408 1194 SUPERFAMILY Bromodomain 890 1004 IPR036427 GO:0005515
Vian5g01408 1194 FunFam ATPase family, AAA domain-containing 2 370 553 - -
Vian5g01408 1194 Pfam AAA+ lid domain 574 611 IPR041569 -
Vian5g01408 1194 Pfam Bromodomain 902 973 IPR001487 GO:0005515
Vian5g01408 1194 CDD Bromo_AAA 892 1002 - -
Vian5g01408 1194 Gene3D - 548 633 - -
Vian5g01408 1194 Gene3D - 370 640 IPR027417 -
Vian5g01408 1194 PANTHER AAA DOMAIN-CONTAINING 1066 1172 IPR045199 -
Vian5g01408 1194 MobiDBLite consensus disorder prediction 119 165 - -
Vian5g01408 1194 ProSitePatterns AAA-protein family signature. 517 535 IPR003960 GO:0005524|GO:0016887
Vian5g01408 1194 FunFam ATPase family AAA domain-containing protein 2B 548 633 - -
Vian5g01408 1194 SMART bromo_6 892 999 IPR001487 GO:0005515
Vian5g01408 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 909 IPR027417 -
Vian5g01408 1194 PRINTS Bromodomain signature 958 977 IPR001487 GO:0005515
Vian5g01408 1194 PRINTS Bromodomain signature 940 958 IPR001487 GO:0005515
Vian5g01408 1194 PRINTS Bromodomain signature 924 940 IPR001487 GO:0005515
Vian5g01408 1194 ProSiteProfiles Bromodomain profile. 915 977 IPR001487 GO:0005515
Vian5g01408 1194 MobiDBLite consensus disorder prediction 259 286 - -
Vian5g01408 1194 MobiDBLite consensus disorder prediction 44 232 - -
Vian5g01408 1194 Gene3D - 681 814 IPR027417 -
Vian5g01408 1194 SMART AAA_5 408 549 IPR003593 GO:0016887
Vian5g01408 1194 FunFam ATPase family AAA domain-containing protein 884 1012 - -
Vian5g01408 1194 MobiDBLite consensus disorder prediction 1068 1096 - -
Vian5g01408 1194 Pfam ATPase family associated with various cellular activities (AAA) 412 547 IPR003959 GO:0005524|GO:0016887
Vian5g01408 1194 Gene3D - 884 1012 IPR036427 GO:0005515
Vian5g01408 1194 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01408 Vian-Chr5 36729434 36738300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01408 358 612 Calmodulin-binding Proteins AT3G56690 36.680 6.44e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01408 K22531 - gmx:100787765 2097.01