Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01403 ATGGGAAGCTGCATTTCAACGCAAGGCGTGAGGACACGCAAGAGGGTCAAGCACACGAGCAAACCCTCGTCGCCCCGACCCCACGGACACGGGCACCTGCCAGAACAGACGACGCGGAGGTCGAGCGTGGTGGCGCCTAGGTCGAGCGTGACGGCGCGTCCGCTGAATGTGGTTGCGAACCCGAGTCCGGGGAACATATTCGATAAGTACCAGTTCGGGAAGGAGCTGGGTCGTGGTGAGTTCGGCGTGACTCACCGCGTGGTGGATTTGGTGAGCGGCGAAGCGTTTGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGAACGGAGATTGACGTGGAAGATGTGAAAAGAGAGGTACAGATCATGAGGCACTTGCCTCGGCACCCCAACATCGTGGCCTTCAAGGAGGCTTATGAGGACAGAGACGCCGTTTACCTCGTCATGGAACTCTGTGAAGGTGGCGAACTCTTTGATAGGATTGTTGCTAAGGGCCATTACACAGAGCGTGCTGCTGCTAATGTTGCCAAAACCATACTTGAAGTTTGCAAGGTGTGTCATGAGCACGGAGTAATACACAGAGACTTGAAACCTGAAAATTTCTTATTTGCAGATGCAAGCGAGAATGCTGCACTGAAATCAATTGATTTTGGCCTTTCTACCTTCTATGTGCCTGAAAGCGAGGAAGGGATTGCACAGGCGATCATTAAGGGTAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACATCTAGTTAAGCGCATGCTTGATCCAAGTCCATTCACACGGATAACAGTTCAAGAAGTTCTTGATCATTCCTGGATACAAAATAGGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGAAAGGTTCTTAGAGTGGTGGCGGATAACCTGTCAGATGAACAAATTGAAGCGTTTAAGAAAATGTTTGATATGATGGATAAGGACAAAAACGGAAACTTGTCATTTGAAGAGCTCAAAGATGGTCTTTCAATGATTGGACACGCCATTCCTGATCCTGATGTCCAAATGTTACTGGAAGCTGCGGATGCTGATGGAAACGGCACCCTTAGCTATGATGAGTTCATCACAATGAGTGTTCACCTCAAAAAGATCGAAGGTGATGAACATCTCACTCAAGCATTCCGTTACTTTGACAAGAATCAGACCGGATATGTTGAGTTCGAAGAGTTGAAGGATGCCTTATCAGATGATGAGTCGGAAGTGATGAACGACCAAGTGATCAAAGACATTATAAATGATGTTGACTTGGATAAGGATGGTCGAATCAGTTTTGCGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCCTCTCGTCAGTATTCAAGAGCATTGCTGAATGCATTAAGCTTCAAGATGTTTAAAGACACTTCTACCAGAGTGTAA 1485 0.466 MGSCISTQGVRTRKRVKHTSKPSSPRPHGHGHLPEQTTRRSSVVAPRSSVTARPLNVVANPSPGNIFDKYQFGKELGRGEFGVTHRVVDLVSGEAFACKKIAKTKLRTEIDVEDVKREVQIMRHLPRHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFADASENAALKSIDFGLSTFYVPESEEGIAQAIIKGKVDFTRDPWPKVSDEAKHLVKRMLDPSPFTRITVQEVLDHSWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQIEAFKKMFDMMDKDKNGNLSFEELKDGLSMIGHAIPDPDVQMLLEAADADGNGTLSYDEFITMSVHLKKIEGDEHLTQAFRYFDKNQTGYVEFEELKDALSDDESEVMNDQVIKDIINDVDLDKDGRISFAEFKAMMKTGGDWKMASRQYSRALLNALSFKMFKDTSTRV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01403 494 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Vian5g01403 494 Gene3D Transferase(Phosphotransferase) domain 1 226 286 - -
Vian5g01403 494 ProSiteProfiles EF-hand calcium-binding domain profile. 323 358 IPR002048 GO:0005509
Vian5g01403 494 CDD EFh 399 462 IPR002048 GO:0005509
Vian5g01403 494 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Vian5g01403 494 FunFam Calcium-dependent protein kinase 1 72 155 - -
Vian5g01403 494 ProSiteProfiles Protein kinase domain profile. 70 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01403 494 MobiDBLite consensus disorder prediction 11 25 - -
Vian5g01403 494 SUPERFAMILY Protein kinase-like (PK-like) 58 288 IPR011009 -
Vian5g01403 494 Pfam EF-hand domain pair 398 462 IPR002048 GO:0005509
Vian5g01403 494 Pfam EF-hand domain pair 326 387 IPR002048 GO:0005509
Vian5g01403 494 Gene3D - 287 464 - -
Vian5g01403 494 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Vian5g01403 494 Pfam Protein kinase domain 70 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01403 494 SUPERFAMILY EF-hand 317 467 IPR011992 -
Vian5g01403 494 SMART efh_1 399 427 IPR002048 GO:0005509
Vian5g01403 494 SMART efh_1 327 355 IPR002048 GO:0005509
Vian5g01403 494 SMART efh_1 436 464 IPR002048 GO:0005509
Vian5g01403 494 SMART efh_1 363 391 IPR002048 GO:0005509
Vian5g01403 494 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 221 - -
Vian5g01403 494 MobiDBLite consensus disorder prediction 1 49 - -
Vian5g01403 494 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Vian5g01403 494 ProSitePatterns EF-hand calcium-binding domain. 336 348 IPR018247 -
Vian5g01403 494 FunFam Calcium-dependent protein kinase 7 289 465 - -
Vian5g01403 494 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Vian5g01403 494 Gene3D Transferase(Phosphotransferase) domain 1 63 225 - -
Vian5g01403 494 CDD EFh 328 387 IPR002048 GO:0005509
Vian5g01403 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vian5g01403 494 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vian5g01403 494 SMART serkin_6 70 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01403 494 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01403 Vian-Chr5 36691691 36694804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01403 1 489 EF-hand Containing Proteins AT2G31500 57.952 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian5g01403 Pkinase 5.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01403 K13412 - gmx:100818929 834.328