Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01402 ATGCAGTCGGAGGATGACATGCACGACGCCAACGACATCGATTCCCTCGACGACGATTTCTACAGCGGCGAAACCGAGGATGCGCCCTTGGACTACTACAGCGATTACGACGATGAGGCCGATGATTACTTCGAAGAAGCTGACAGGATTGAGTCTCGTCGTCCTGAGCAAAATTTTACCATTTTGAAGGAATCCGACATCAAACAAAGACAGGAAGAAGATGTCACTAGAGTAGCAACTGTTCTTTCCATATCAAGAATTTTTGCAAGCATACTACTTCGTTACTACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCTGATGAAGAACAAGTCAGAAAATCAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCATGATAATAATACTAGAGAGTCTGTGTTGAGTCAAGTGGCCATGGCAGAGTCTGAGGCTATGAGCCTTATAGGCTATATCAGCACATCCATTAGTGATGGTCCCGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTCGGTCAAGATATGATTAGTCTTCTAAAATCTGATGAAGATAAGCAGAAATATGCACGTTATCTTCTTAGGTCATACATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATGTGCTGTCACTTTTGATGCTGTTAGTGTTGGGAATTACGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTAGACTGTGGGACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAATTGGATACTTGCTAATTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACTTGCACACCGCCCTGTAAATATGAGTTTTGCTGGCTATGCCTTGGTGTATGGTCAGACCACGGTGAAAGAACTGGGGGTTTTTATGCTTGCAATCGCTATGAAACAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCACTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTACAAATAATTGAATGTAGAAGAGTACTGAAATGGACATACGCATACGGGTTCTACTTACCCGAGCATGAGCTTGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGCCTGGAGAGACTTCATCAATGTGCAGAAAAGGAACTTCAGCCATTCCTATGTGCTGATGAGCCATCTAGAGAATTCAATGACTTTCGTACTAAACTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTGGTAAGGGCGTTAGAGAATGGTTTATCTGACGTGGATAGTAATGGAGCTTCCTTCAGCAGAGCAACGAGCTCAAAAAATGCTGCTGGTAGCAGTAAAGGGAGATCCGGAAGAGTAAAGGGAACTTTTCGAACCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTCAAATCTGCCACAACATGCCAGATGTGCTATCAACAGCGTAGATGA 1731 0.4339 MQSEDDMHDANDIDSLDDDFYSGETEDAPLDYYSDYDDEADDYFEEADRIESRRPEQNFTILKESDIKQRQEEDVTRVATVLSISRIFASILLRYYNWSVSRVHDAWFADEEQVRKSVGLLEKPIVQHDNNTRESVLSQVAMAESEAMSLIGYISTSISDGPGCLMLRCPDPTCGAAVGQDMISLLKSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCECAVTFDAVSVGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHELAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADEPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGASFSRATSSKNAAGSSKGRSGRVKGTFRTSMSSRMNDDSHWCCEHCTYANVKSATTCQMCYQQRR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01402 576 CDD Rcat_RBR_ARI7-like 279 333 - -
Vian5g01402 576 ProSiteProfiles TRIAD supradomain profile. 119 334 IPR044066 -
Vian5g01402 576 MobiDBLite consensus disorder prediction 10 34 - -
Vian5g01402 576 Coils Coil 33 53 - -
Vian5g01402 576 Gene3D - 252 507 - -
Vian5g01402 576 MobiDBLite consensus disorder prediction 516 543 - -
Vian5g01402 576 MobiDBLite consensus disorder prediction 1 34 - -
Vian5g01402 576 SMART ibrneu5 260 330 IPR002867 GO:0008270
Vian5g01402 576 SMART ibrneu5 193 256 IPR002867 GO:0008270
Vian5g01402 576 SUPERFAMILY RING/U-box 194 263 - -
Vian5g01402 576 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 74 422 IPR031127 GO:0004842|GO:0016567
Vian5g01402 576 Pfam Ariadne domain 343 504 IPR045840 -
Vian5g01402 576 FunFam RBR-type E3 ubiquitin transferase 257 507 - -
Vian5g01402 576 ProSitePatterns Zinc finger RanBP2-type signature. 552 571 IPR001876 -
Vian5g01402 576 CDD BRcat_RBR_ANKIB1 200 265 - -
Vian5g01402 576 SUPERFAMILY RING/U-box 151 205 - -
Vian5g01402 576 SUPERFAMILY RING/U-box 275 323 - -
Vian5g01402 576 Pfam IBR domain, a half RING-finger domain 193 256 IPR002867 GO:0008270
Vian5g01402 576 Pfam IBR domain, a half RING-finger domain 273 320 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01402 Vian-Chr5 36682286 36689289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01402 17 575 ARIADNE family AT1G65430 66.495 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01402 K11968 - gmx:100784195 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00309 11 2876285 2888981 Vian5g01402 5 36682286 36689289 PCT