Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01393 ATGCGAATAAATCCTACTACTTCCGGTCCTGAAATTTCTTCGATTGAAAAAAAAAATCTGGGACATATTGACCAAATAATCGGTCCGGTACTAGATGTAGCCTTTCCCCCGGGGCAGATGCCTAATATTTACAATGCTCTGGTAGTTACGGGTCGAGATACTGTTGGTCAACAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGCCTAAAGAGAGGAATGGAAGTTATTGACACAGGAACTCCCCTAAGTGTTCCAGTAGGCGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCGATTGATAATTTAGGTCCTGTAGATACTCGTACAACATCTCCCATTCATAGATCTGCGCCTACCTTTATACAATTAGATACAAAATTATCTATTTTTGAAACAGGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCACGGAGGTGTATCTGTATTTGGCGGAGTAGGTGAGCGTACTCGCGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCTAAAGTAGCTCTAGTATATGGTCAAATGAATGAACCACCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTCAATGAGCAAGATGTACTTCTATTTATTGACAATATCTTCCGCTTCGTTCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTAACTGACCCTGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCCGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTCCAACCTCGAATCGTTGGTGAAGAACATTATGAGACTGCGCAACGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATCCTTGGCTTGGACGAATTATCCGAAGAAGATCGCTTAACCGTAGCGAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTTTTTACCGGTTCGGCTGGAAAATATGTTGGTCTAGTAGAAACAATTAGAGGGTTTAATTTGATTCTTTCTGGAGAATTAGACGGTCTTCCTGAACAAGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAACGGAGAGCAATTTGAAGAAATGA 1497 0.4021 MRINPTTSGPEISSIEKKNLGHIDQIIGPVLDVAFPPGQMPNIYNALVVTGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLKRGMEVIDTGTPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPTFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSAGKYVGLVETIRGFNLILSGELDGLPEQAFYLVGNIDEATAKATNLETESNLKK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01393 498 FunFam ATP synthase subunit beta 79 424 - -
Vian5g01393 498 Gene3D - 18 97 - -
Vian5g01393 498 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 95 IPR004100 GO:0046034|GO:1902600
Vian5g01393 498 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 490 - -
Vian5g01393 498 FunFam ATP synthase subunit beta 375 494 - -
Vian5g01393 498 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Vian5g01393 498 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vian5g01393 498 FunFam ATP synthase subunit beta 98 374 - -
Vian5g01393 498 Gene3D - 375 498 IPR024034 -
Vian5g01393 498 PANTHER ATP SYNTHASE 17 495 - -
Vian5g01393 498 SMART AAA_5 164 356 IPR003593 GO:0016887
Vian5g01393 498 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Vian5g01393 498 NCBIfam F0F1 ATP synthase subunit beta 20 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vian5g01393 498 CDD F1-ATPase_beta_CD 99 377 - -
Vian5g01393 498 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Vian5g01393 498 Gene3D - 98 374 IPR027417 -
Vian5g01393 498 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Vian5g01393 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Vian5g01393 498 CDD ATP-synt_F1_beta_N 19 98 - -
Vian5g01393 498 CDD ATP-synt_F1_beta_C 379 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01393 Vian-Chr5 36589807 36591303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01393 94 429 Primary Pumps ATPases(2) AT1G20260 27.049 3.70e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01393 K02112 - ming:20832704 935.636