Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01385 ATGTCCTCCACCACCGCATCCGGCGACGGTACTCCATCCCTCCACTTCGATACGCCGACGCTGGACCGGGAGTTAGCGGCGCTTCTCCACTCCATTTCCGAGCACGGCGGGTACGCGTACGTGAGCATGGCAGCGCTGGCGGCCGGGGGCGACATTCGCGCGGCGGAGGCGGCGTGTGAGATGGCGTGGGAGCAGCTGCACTCTGGGCCTTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCTTGCCTCCACGTGGCTCGACACCACTATGGCAACGGGGAGTTCAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGGACGCTCCTTCGCAAGGATTTGGACTCCGCCGTCGCGAAAGTGTCGGAACAAGCTCGAAGGACCGTTAGGGTTTCTGAACTGGGAGACTCGGGACACCGGTTCGTCGATCGGGACTTTAATATGGCAGAGGTGCTCCAACTTTTACCAATTAAGTCTCTTTCTTCTACGCTTGTGGTCAAGAAATCAGCGCTGTCGTTGGATAAATTCCTAAAGGATCATTACCTGTCTCGCTCTCCGGTTATTATCAGAGATTGTATGGCTCACTGGCCAGCCAGCTCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCCGGTGACCGCACAGTTCCGGTTGAGCGTTTTTTCCAGGTTGGAAAAAACTATTTATGTGCTGAATGGAAGCAAGAGCTGATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGGTGCCTGTTCTCTTGGTGGTCCTACTTATCTTGCTCAGCATCCATTATTTGAACAGATAAATGAGCTGCGGAAAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTGACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAAGGAAGTTCCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTGGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGAGGTCTTTGACTACAAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACAATTCGGATGCATCCTAA 1254 0.504 MSSTTASGDGTPSLHFDTPTLDRELAALLHSISEHGGYAYVSMAALAAGGDIRAAEAACEMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDSAVAKVSEQARRTVRVSELGDSGHRFVDRDFNMAEVLQLLPIKSLSSTLVVKKSALSLDKFLKDHYLSRSPVIIRDCMAHWPASSKWNDEDYLLRVAGDRTVPVERFFQVGKNYLCAEWKQELITFSEFIQRIKSGACSLGGPTYLAQHPLFEQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQVDLDDVDERKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDNSDAS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01385 417 Pfam Cupin-like domain 182 410 IPR041667 -
Vian5g01385 417 Gene3D Cupin 171 409 - -
Vian5g01385 417 FunFam lysine-specific demethylase JMJ30 171 408 - -
Vian5g01385 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 412 - -
Vian5g01385 417 SMART cupin_9 266 416 IPR003347 -
Vian5g01385 417 ProSiteProfiles JmjC domain profile. 275 417 IPR003347 -
Vian5g01385 417 SUPERFAMILY Clavaminate synthase-like 177 410 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01385 182 408 Acyl Lipid Metabolism Gene Families AT3G45880 24.164 8.36e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian5g01385 Cupin_8 6.9e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01385 K24444 - gmx:100813075 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01385 5 36482292 36486856 Vian5g01385 5 36482292 36486856 ECH