Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01381 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCAGCAGCCGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCTTATTTTTCGAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCTGATGCTGCTGATGCAGAGGATGCGCTTCCTACTCAAAATCCCTCTACCGTTGTTGCTGTTAAAGAAGAGGTTAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCTCTTGTTCTCCAACAACATCAACAGCAGCAACAAAGTAATATCAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACATTGGACGACCACCTTTGCCAAACCAGATTGAGACCGGTCGTAGAAGTGCTTCAAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGTTATGCTGCTGTAAGAGGCATGGGGACTATGGGAGCTGCTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGATTAATGTCGTCAAGGGCTGAAATTGGAAACAAAAACAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGACAGCCAGGGCAATGAATTCATCCCTGGTTTCCCCGTTGGTTCATGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGACACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACCTACCCGAAAGTCAGAACGAAGCAGGAGGCCAACCTTCCACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCGAAACGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTATCGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGAAAATCGCGATAAGTGTACGTGTTCACACAATCAGCAGCAGCAGCAATAA 1236 0.4417 MESDLQQHPPMFLDHQQPTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADADAADAEDALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQHQQQQQSNINNYGSSAPQNFYQNIGRPPLPNQIETGRRSASNLIRHGSSPAGLFSNINIESGYAAVRGMGTMGAANNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKNNTQNNAENEGFADSQGNEFIPGFPVGSWDDSAIMSDNMTGLKRHREEDVKPFSGLNLPESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSENRDKCTCSHNQQQQQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01381 411 MobiDBLite consensus disorder prediction 1 26 - -
Vian5g01381 411 FunFam Transcription factor bHLH130 family 338 407 - -
Vian5g01381 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 387 IPR011598 GO:0046983
Vian5g01381 411 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 408 - -
Vian5g01381 411 SMART finulus 343 393 IPR011598 GO:0046983
Vian5g01381 411 Coils Coil 377 404 - -
Vian5g01381 411 Gene3D - 338 411 IPR036638 GO:0046983
Vian5g01381 411 MobiDBLite consensus disorder prediction 10 26 - -
Vian5g01381 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 401 IPR036638 GO:0046983
Vian5g01381 411 Pfam Helix-loop-helix DNA-binding domain 342 388 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01381 Vian-Chr5 36445497 36448330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01381 1 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 42.446 2.75e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g01381 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01381 - - gmx:100803833 645.58